[med-svn] [r-bioc-deseq2] 04/06: Update upstream source from tag 'upstream/1.18.0'

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository r-bioc-deseq2.

commit 10f472286d33cbd777ed722c4d897b84a14e68fa
Merge: 0aa0e5c 36eda24
Author: Andreas Tille <tille at debian.org>
Date:   Fri Nov 10 09:03:09 2017 +0100

    Update upstream source from tag 'upstream/1.18.0'
    
    Update to upstream version '1.18.0'
    with Debian dir 28d463daada5b61eeaed4261503106b314b5ce68

 DESCRIPTION                               |   9 +-
 NAMESPACE                                 |   4 +
 NEWS                                      |  18 +
 R/AllClasses.R                            |  41 +-
 R/AllGenerics.R                           |   8 +
 R/RcppExports.R                           |   6 +-
 R/core.R                                  |  29 +-
 R/helper.R                                |  76 +--
 R/lfcShrink.R                             | 318 ++++++++++++
 R/methods.R                               |  32 +-
 R/plots.R                                 |  43 +-
 R/results.R                               |  12 +-
 build/vignette.rds                        | Bin 219 -> 221 bytes
 inst/doc/DESeq2.R                         | 101 ++--
 inst/doc/DESeq2.Rmd                       | 444 ++++++++++-------
 inst/doc/DESeq2.html                      | 802 ++++++++++++++++++------------
 man/DESeq.Rd                              |   6 +-
 man/DESeq2-package.Rd                     |   4 +-
 man/DESeqResults.Rd                       |   4 +-
 man/estimateDispersionsGeneEst.Rd         |   4 +-
 man/lfcShrink.Rd                          | 102 +++-
 man/normTransform.Rd                      |   2 +-
 man/priorInfo.Rd                          |  30 ++
 src/RcppExports.cpp                       |  18 +-
 tests/testthat/test_construction_errors.R |   2 +
 tests/testthat/test_interactions.R        |  10 +-
 tests/testthat/test_lfcShrink.R           |  56 ++-
 tests/testthat/test_nbinomWald.R          |  10 +
 tests/testthat/test_parallel.R            |  14 +
 tests/testthat/test_results.R             |  15 +-
 vignettes/DESeq2.Rmd                      | 444 ++++++++++-------
 vignettes/library.bib                     |  69 ++-
 32 files changed, 1825 insertions(+), 908 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-deseq2.git