[med-svn] [htslib] 01/02: Import Debian changes 1.5-2

[Mattia Rizzolo]

This is an automated email from the git hooks/post-receive script.

mattia pushed a commit to branch debian/unstable
in repository htslib.

commit 2823ef83c80be8949a5a8101f5cdcd36696d5cc6
Author: Andreas Tille <tille at debian.org>
Date:   Wed Nov 8 08:24:26 2017 +0100

    Import Debian changes 1.5-2
    
    htslib (1.5-2) unstable; urgency=medium
    
      * Apply patch provided by Graham Inggs <ginggs at debian.org> to fix FTBFS
        on armel armhf and ppc64el of bcftools
        Closes: #877670
      * Standards-Version: 4.1.1
---
 .gitattributes   | 12 ------------
 .gitignore       | 51 ---------------------------------------------------
 .travis.yml      | 29 -----------------------------
 README.md        | 34 ----------------------------------
 debian/changelog |  4 ++--
 5 files changed, 2 insertions(+), 128 deletions(-)

diff --git a/.gitattributes b/.gitattributes
deleted file mode 100644
index 173dcd3..0000000
--- a/.gitattributes
+++ /dev/null
@@ -1,12 +0,0 @@
-# Ensure BAM and CRAM files are left as binary.  To display changes in them
-# by converting to SAM, add to your configuration (perhaps with --global):
-#
-#	git config diff.bam.textconv  "samtools view -h"
-#	git config diff.cram.textconv "samtools view -h"
-*.bam     -text diff=bam
-*.cram    -text diff=cram
-
-# Omit these files from release tarballs.
-.git*           export-ignore
-/.travis.yml    export-ignore
-README.md       export-ignore
diff --git a/.gitignore b/.gitignore
deleted file mode 100644
index 6972b55..0000000
--- a/.gitignore
+++ /dev/null
@@ -1,51 +0,0 @@
-*.o
-*.pico
-*.dSYM
-*.exe
-*.pc.tmp
-*-uninstalled.pc
-/version.h
-
-autom4te.cache
-config.cache
-config.h
-config.h.in
-config.log
-config.mk
-config.status
-configure
-
-hfile_*.bundle
-hfile_*.cygdll
-hfile_*.dll
-hfile_*.so
-
-htslib_static.mk
-
-cyg*.dll
-lib*.a
-lib*.dll
-lib*.dylib
-lib*.so
-lib*.so.*
-
-/bgzip
-/htsfile
-/tabix
-/test/fieldarith
-/test/hfile
-/test/hts_endian
-/test/sam
-/test/tabix/*.tmp.*
-/test/tabix/FAIL*
-/test/test_bgzf
-/test/test-regidx
-/test/test-vcf-api
-/test/test-vcf-sweep
-/test/test-bcf-sr
-/test/test_view
-/test/thrash_threads[1-6]
-/test/*.tmp
-/test/*.tmp.*
-
-/TAGS
diff --git a/.travis.yml b/.travis.yml
deleted file mode 100644
index 579f1ca..0000000
--- a/.travis.yml
+++ /dev/null
@@ -1,29 +0,0 @@
-# Control file for continuous integration testing at http://travis-ci.org/
-
-language: c
-compiler:
-  - clang
-  - gcc
-
-os:
-  - linux
-  - osx
-
-env:
-  - USE_CONFIG=no
-  - USE_CONFIG=yes
-
-# For linux systems
-addons:
-  apt:
-    packages:
-    - liblzma-dev
-    - libbz2-dev
-
-# For MacOSX systems
-before_install:
-  - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew update    ; fi
-  - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew install xz; fi
-
-script:
-  - if test "$USE_CONFIG" = "yes" ; then autoreconf && ./configure ; fi && make -e && make test
diff --git a/README.md b/README.md
deleted file mode 100644
index b69d410..0000000
--- a/README.md
+++ /dev/null
@@ -1,34 +0,0 @@
-HTSlib is an implementation of a unified C library for accessing common file
-formats, such as [SAM, CRAM and VCF][1], used for high-throughput sequencing
-data, and is the core library used by [samtools][2] and [bcftools][3].
-HTSlib only depends on [zlib][4].
-It is known to be compatible with gcc, g++ and clang.
-
-HTSlib implements a generalized BAM index, with file extension `.csi`
-(coordinate-sorted index). The HTSlib file reader first looks for the new index
-and then for the old if the new index is absent.
-
-This project also includes the popular tabix indexer, which indexes both `.tbi`
-and `.csi` formats, and the bgzip compression utility.
-
-[1]: http://samtools.github.io/hts-specs/
-[2]: http://github.com/samtools/samtools
-[3]: http://samtools.github.io/bcftools/
-[4]: http://zlib.net/
-
-### Building HTSlib
-
-See [INSTALL](INSTALL) for complete details.
-[Release tarballs][download] contain generated files that have not been
-committed to this repository, so building the code from a Git repository
-requires extra steps:
-
-```sh
-autoheader     # If using configure, generate the header template...
-autoconf       # ...and configure script (or use autoreconf to do both)
-./configure    # Optional, needed for choosing optional functionality
-make
-make install
-```
-
-[download]: http://www.htslib.org/download/
diff --git a/debian/changelog b/debian/changelog
index 0e89724..4926ec4 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,11 +1,11 @@
-htslib (1.5-2) UNRELEASED; urgency=medium
+htslib (1.5-2) unstable; urgency=medium
 
   * Apply patch provided by Graham Inggs <ginggs at debian.org> to fix FTBFS
     on armel armhf and ppc64el of bcftools
     Closes: #877670
   * Standards-Version: 4.1.1
 
- -- Andreas Tille <tille at debian.org>  Wed, 08 Nov 2017 08:21:37 +0100
+ -- Andreas Tille <tille at debian.org>  Wed, 08 Nov 2017 08:24:26 +0100
 
 htslib (1.5-1) unstable; urgency=medium
 

-- 
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