[med-svn] [r-other-apmswapp] 01/12: Add packaging for r-other-apmswapp (needs more predependencies)

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-other-apmswapp.

commit f824025f09b70d81f923bd0be6dca8511c1fb925
Author: Andreas Tille <tille at debian.org>
Date:   Fri May 8 15:16:25 2015 +0000

    Add packaging for r-other-apmswapp (needs more predependencies)
---
 debian/changelog         |  6 ++++++
 debian/compat            |  1 +
 debian/control           | 30 ++++++++++++++++++++++++++++++
 debian/copyright         | 11 +++++++++++
 debian/rules             |  4 ++++
 debian/source/format     |  1 +
 debian/upstream/metadata | 11 +++++++++++
 debian/watch             |  3 +++
 8 files changed, 67 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..aa3297d
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,6 @@
+r-other-apmswapp (1.0-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #<bug>)
+    Needs several other r packages: 'genefilter', 'seqinr', 'multtest', 'DESeq', 'aroma.light'
+
+ -- DMPT <debian-med-packaging at lists.alioth.debian.org>  Mon, 04 May 2015 10:49:06 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..700845a
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,30 @@
+Source: r-other-apmswapp
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9),
+               cdbs,
+               r-base-dev,
+               r-cran-gtools,
+               r-bioc-edger,
+               r-bioc-limma
+Standards-Version: 3.9.6
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-other-apmswapp/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-other-apmswapp/trunk/
+Homepage: http://sourceforge.net/projects/apmswapp/
+
+Package: r-other-apmswapp
+Architecture: any
+Depends: ${misc:Depends},
+         r-cran-gtools,
+         r-bioc-edger,
+         r-bioc-limma
+Description: GNU R Pre- and Postprocessing For Affinity Purification Mass Spectrometry 
+ The reliable detection of protein-protein-interactions by affinity
+ purification mass spectrometry (AP-MS) is a crucial stepping stone for
+ the understanding of biological processes. The main challenge in a
+ typical AP-MS experiment is to separate true interaction proteins from
+ contaminants by contrasting counts of proteins binding to specific baits
+ with counts of negative controls.
+ 
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..cb8a69b
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,11 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: Martina Fischer <fischerm at rki.de>
+Source: http://sourceforge.net/projects/apmswapp/files/
+
+Files: *
+Copyright: 2013-2014 Martina Fischer <fischerm at rki.de>
+License: <license>
+
+Files: debian/*
+Copyright: 2015 Andreas Tille <tille at debian.org>
+License: <license>
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..a135b83
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,4 @@
+#!/usr/bin/make -f
+
+debRreposname := other
+include /usr/share/R/debian/r-cran.mk
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
new file mode 100644
index 0000000..6765b59
--- /dev/null
+++ b/debian/upstream/metadata
@@ -0,0 +1,11 @@
+Reference:
+  Author: Martina Fischer and Susann Zilkenat and Roman G. Gerlach and Samuel Wagner and Bernhard Y. Renard
+  Title: "Pre- and post-processing workflow for affinity purification mass spectrometry data"
+  Journal: Journal of Proteome Research
+  Year: 2014
+  Volume: 13
+  Number: 5
+  Pages: 2239-49
+  DOI: 10.1021/pr401249b
+  PMID: 24641689
+  URL: http://pubs.acs.org/doi/abs/10.1021/pr401249b
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..897a45f
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+
+http://sf.net/apmswapp/apmsWAPP_(\d[\d\.]+)\.(?:tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz)))

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