[med-svn] [nanopolish] 03/07: Remove obsolete patches

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository nanopolish.

commit de1bf550874b54037a58794a22bcc168dfdfddd5
Author: Afif Elghraoui <afif at debian.org>
Date:   Sat Nov 11 00:25:05 2017 -0500

    Remove obsolete patches
---
 debian/patches/adjust-include-path.patch | 17 -----------------
 debian/patches/fprintf_sizet.patch       | 26 --------------------------
 2 files changed, 43 deletions(-)

diff --git a/debian/patches/adjust-include-path.patch b/debian/patches/adjust-include-path.patch
deleted file mode 100644
index b54e934..0000000
--- a/debian/patches/adjust-include-path.patch
+++ /dev/null
@@ -1,17 +0,0 @@
-Description: Adjust #include statements
- Use angle brackets rather than quotes so that the library headers can be
- pulled in from prespecified locations.
-Author: Afif Elghraoui <afif at debian.org>
-Forwarded: https://github.com/jts/nanopolish/pull/33
-Last-Update: 2016-08-11
---- a/src/nanopolish_methyltrain.cpp
-+++ b/src/nanopolish_methyltrain.cpp
-@@ -42,7 +42,7 @@
- #include "logger.hpp"
- 
- #include "nanopolish_scorereads.h"
--#include "Eigen/Dense"
-+#include <eigen3/Eigen/Dense>
- 
- extern float g_p_skip, g_p_skip_self, g_p_bad, g_p_bad_self;
- 
diff --git a/debian/patches/fprintf_sizet.patch b/debian/patches/fprintf_sizet.patch
deleted file mode 100644
index ad0bf61..0000000
--- a/debian/patches/fprintf_sizet.patch
+++ /dev/null
@@ -1,26 +0,0 @@
-Author: Steffen Moeller
-Last-Update: 2017-09-16 02:14:07 +0200
-Description: Fix format-error issues blamed by gcc-7
-
---- a/src/common/nanopolish_variant.cpp
-+++ b/src/common/nanopolish_variant.cpp
-@@ -175,7 +175,7 @@ void score_variant_group(VariantGroup& v
-     max_r -= 1;
- 
-     if(max_r != num_variants) {
--        fprintf(stderr, "Number of variants in span (%d) would exceed max-haplotypes. Variants may be missed. Consider running with a higher value of max-haplotypes!\n", num_variants);
-+        fprintf(stderr, "Number of variants in span (%lu) would exceed max-haplotypes. Variants may be missed. Consider running with a higher value of max-haplotypes!\n", num_variants);
-     }
- 
-     // Construct haplotypes (including the base haplotype with no variants)
---- a/src/nanopolish_haplotype.cpp
-+++ b/src/nanopolish_haplotype.cpp
-@@ -169,7 +169,7 @@ size_t Haplotype::_find_derived_index_by
- 
- void Haplotype::print_debug_info() const
- {
--    fprintf(stderr, "[haplotype-debug] ctg: %s, position: %d\n", m_ref_name.c_str(), m_ref_position);
-+    fprintf(stderr, "[haplotype-debug] ctg: %s, position: %lu\n", m_ref_name.c_str(), m_ref_position);
-     fprintf(stderr, "[haplotype-debug] r-sequence: %s\n", m_reference.c_str());
-     fprintf(stderr, "[haplotype-debug] h-sequence: %s\n", m_sequence.c_str());
-     for(size_t i = 0; i < m_variants.size(); ++i) {

-- 
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