[med-svn] [clearcut] 11/12: Update upstream source from tag 'upstream/1.0.9'

[Andreas Tille]

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tille pushed a commit to branch master
in repository clearcut.

commit 62fedbcb8e01dc9ab20984819fa5c2488713b8a8
Merge: 1c479fd c372271
Author: Andreas Tille <tille at debian.org>
Date:   Tue Nov 14 08:35:09 2017 +0100

    Update upstream source from tag 'upstream/1.0.9'
    
    Update to upstream version '1.0.9'
    with Debian dir 574bbb5d498ddd1b48f357c75054848a4cd92226

 LICENSE                  |   35 +
 Makefile                 |  133 +++
 README                   |  154 ++++
 TODO                     |   36 +
 clearcut.c               | 2158 ++++++++++++++++++++++++++++++++++++++++++++++
 clearcut.h               |  281 ++++++
 cmdargs.c                |  526 +++++++++++
 cmdargs.h                |  113 +++
 common.h                 |  141 +++
 dayhoff.h                |  100 +++
 dist.c                   |  668 ++++++++++++++
 dist.h                   |  125 +++
 dmat.c                   |  869 +++++++++++++++++++
 dmat.h                   |   91 ++
 examples/alignment1.dist |   10 +
 examples/lower_diag.dist |    6 +
 examples/symmetric.dist  |    6 +
 examples/treezilla.dist  |  501 +++++++++++
 examples/upper_diag.dist |    6 +
 fasta.c                  |  755 ++++++++++++++++
 fasta.h                  |   89 ++
 getopt_long.c            | 2096 ++++++++++++++++++++++++++++++++++++++++++++
 getopt_long.h            |   52 ++
 prng.c                   |  221 +++++
 prng.h                   |   90 ++
 25 files changed, 9262 insertions(+)

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