[med-svn] [garli] 01/10: Inject garli, but needs http://sourceforge.net/projects/ncl/ packaged first

[Andreas Tille]

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tille pushed a commit to branch master
in repository garli.

commit ad1383cc2a6be161d3aa51b54cb54a7c4a4de9b9
Author: Andreas Tille <tille at debian.org>
Date:   Fri Oct 23 09:59:03 2015 +0000

    Inject garli, but needs http://sourceforge.net/projects/ncl/ packaged first
---
 debian/changelog     |  6 ++++++
 debian/compat        |  1 +
 debian/control       | 24 ++++++++++++++++++++++++
 debian/copyright     | 12 ++++++++++++
 debian/rules         | 19 +++++++++++++++++++
 debian/source/format |  1 +
 debian/watch         |  3 +++
 7 files changed, 66 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..d7bffb2
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,6 @@
+garli (2.1-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #<bug>)
+  TODO: Needs http://sourceforge.net/projects/ncl/
+
+ -- Andreas Tille <tille at debian.org>  Fri, 23 Oct 2015 08:41:45 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..f3d4dd4
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,24 @@
+Source: garli
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               dh-autoreconf
+Standards-Version: 3.9.6
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/garli/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/garle/trunk/
+Homepage: https://github.com/Ashod/garli
+
+Package: garli
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
+Description: phylogenetic analysis of molecular sequence data using maximum-likelihood
+ GARLI, Genetic Algorithm for Rapid Likelihood Inference is a program for
+ inferring phylogenetic trees. Using an approach similar to a classical
+ genetic algorithm, it rapidly searches the space of evolutionary trees
+ and model parameters to find the solution maximizing the likelihood
+ score. It implements nucleotide, amino acid and codon-based models of
+ sequence evolution, and runs on all platforms. The latest version adds
+ support for partitioned models and morphology-like datatypes.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..6eb7896
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,12 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: garli
+Upstream-Contact: garli.support at gmail.com
+Source: https://github.com/Ashod/garli/releases
+
+Files: *
+Copyright: © 20xx-20yy <upstream>
+License: <license>
+
+Files: debian/*
+Copyright: © 2014 maintainername <maintainer at e.mail>
+License: <license>
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..b835e3b
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,19 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+# some helpful variables - uncomment them if needed
+# shamelessly stolen from http://jmtd.net/log/awk/
+#DEBVERS        := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}')
+#VERSION        := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//')
+#DEBFLAVOR      := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}')
+#DEBPKGNAME     := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
+#DEBIAN_BRANCH  := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf)
+#GIT_TAG        := $(subst ~,_,$(VERSION))
+
+# alternatively to manually set those variables, you can
+#  include /usr/share/dpkg/default.mk
+# and use what is set there.
+
+%:
+	dh $@ --with autoreconf
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..ab72a3c
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+
+https://github.com/Ashod/garli/releases .*/archive/(\d[\d.-]+)-release\.(?:tar(?:\.gz|\.bz2)?|tgz)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/garli.git