[med-svn] [graphlan] 01/14: Inject initial packaging for graphlan (needs https://bitbucket.org/nsegata/pyphlan)
Andreas Tille
tille at debian.org
Wed Nov 15 10:35:02 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository graphlan.
commit c25c60fba5c5e75c90ddc7e502e3129076501d20
Author: Andreas Tille <tille at debian.org>
Date: Fri May 27 09:44:53 2016 +0000
Inject initial packaging for graphlan (needs https://bitbucket.org/nsegata/pyphlan)
---
debian/changelog | 7 +++++++
debian/clean | 1 +
debian/compat | 1 +
debian/control | 26 ++++++++++++++++++++++++++
debian/copyright | 32 ++++++++++++++++++++++++++++++++
debian/examples | 1 +
debian/install | 2 ++
debian/links | 2 ++
debian/rules | 17 +++++++++++++++++
debian/source/format | 1 +
debian/watch | 3 +++
11 files changed, 93 insertions(+)
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..1a48d7e
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,7 @@
+graphlan (1.0-1) UNRELEASED; urgency=medium
+
+ * Initial release (Closes: #<bug>)
+ TODO: python-pyphlan
+ https://bitbucket.org/nsegata/pyphlan
+
+ -- Andreas Tille <tille at debian.org> Mon, 23 May 2016 16:09:13 +0200
diff --git a/debian/clean b/debian/clean
new file mode 100644
index 0000000..c17e466
--- /dev/null
+++ b/debian/clean
@@ -0,0 +1 @@
+taxcuration/*.pyc
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..6811747
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,26 @@
+Source: graphlan
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ python-all,
+ dh-python
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/graphlan/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/graphlan/trunk/
+Homepage: https://bitbucket.org/nsegata/graphlan/wiki/Home
+
+Package: graphlan
+Architecture: all
+Depends: ${python:Depends},
+ ${misc:Depends},
+ python-biopython,
+ python-numpy,
+ python-matplotlib,
+ python-pyphlan
+Description: circular representations of taxonomic and phylogenetic trees
+ GraPhlAn is a software tool for producing high-quality circular
+ representations of taxonomic and phylogenetic trees. It focuses on
+ concise, integrative, informative, and publication-ready representations
+ of phylogenetically- and taxonomically-driven investigation.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..855d975
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,32 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: PhyloPhlAn
+Upstream-Contact: Nicola Segata <nicola.segata at unitn.it>
+Source: https://bitbucket.org/nsegata/phylophlan/downloads
+
+Files: *
+Copyright: 2012-206 Nicola Segata and Curtis Huttenhower
+License: expat
+
+Files: debian/*
+Copyright: © 2016 maintainername <maintainer at e.mail>
+License: expat
+
+License: expat
+ Permission is hereby granted, free of charge, to any person obtaining a
+ copy of this software and associated documentation files (the
+ "Software"), to deal in the Software without restriction, including
+ without limitation the rights to use, copy, modify, merge, publish,
+ distribute, sublicense, and/or sell copies of the Software, and to
+ permit persons to whom the Software is furnished to do so, subject to
+ the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included
+ in all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
+ OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
+ IN NO EV ENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
+ CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
+ TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
+ SOFTWARE OR TH E USE OR OTHER DEALINGS IN THE SOFTWARE.
diff --git a/debian/examples b/debian/examples
new file mode 100644
index 0000000..e39721e
--- /dev/null
+++ b/debian/examples
@@ -0,0 +1 @@
+examples/*
diff --git a/debian/install b/debian/install
new file mode 100644
index 0000000..68c6da9
--- /dev/null
+++ b/debian/install
@@ -0,0 +1,2 @@
+graphlan*.py usr/share/graphlan
+src usr/share/graphlan
diff --git a/debian/links b/debian/links
new file mode 100644
index 0000000..d262ee0
--- /dev/null
+++ b/debian/links
@@ -0,0 +1,2 @@
+usr/share/graphlan/graphlan.py usr/bin/graphlan
+usr/share/graphlan/graphlan_annotate.py usr/bin/graphlan_annotate
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..c524cf0
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,17 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+export LC_ALL=C.UTF-8
+
+
+%:
+ dh $@ --with python2
+
+override_dh_installexamples:
+ dh_installexamples
+ for sh in `find debian/*/usr/share/doc/*/examples -type f -name "*.sh"` ; do \
+ sed -i -e 's/graphlan_annotate.py/graphlan_annotate/g' -e 's/graphlan.py/graphlan/g' $${sh} ; \
+ if ! head -n1 $${sh} | grep -q '/bin/sh' ; then \
+ sed -i '1i #!/bin/sh' $${sh} ; \
+ fi ; \
+ done
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..877e82a
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+
+https://bitbucket.org/nsegata/graphlan/downloads .*/(\d\S*)\.tar\.gz
--
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