[med-svn] [gatb-core] branch master updated (e3c8b5c -> 1e0e3b7)
Andreas Tille
tille at debian.org
Thu Nov 16 17:17:36 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository gatb-core.
from e3c8b5c Create package
new a5d1472 Files-Excluded
new b8c3a15 New upstream version 1.3.0+dfsg
new 1e0e3b7 Update upstream source from tag 'upstream/1.3.0+dfsg'
The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
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Summary of changes:
.travis.yml | 31 -
README.md | 9 +-
debian/changelog | 4 +-
debian/copyright | 3 +
debian/watch | 1 +
gatb-core/.cproject | 140 +
gatb-core/.gitignore | 3 -
gatb-core/CMakeLists.txt | 15 +-
gatb-core/cmake/Delivery.cmake | 2 +-
gatb-core/cmake/GetDate.cmake | 31 +
gatb-core/doc/doxygen/src/mainpage.hpp | 10 +-
gatb-core/doc/doxygen/src/snippetspage.hpp | 45 +-
gatb-core/docker/Dockerfile.clang | 5 +-
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gatb-core/examples/README.md | 84 -
gatb-core/examples/bank/bank15.cpp | 16 +-
gatb-core/examples/bank/bank21.cpp | 97 -
gatb-core/examples/bank/bank22.cpp | 50 -
gatb-core/examples/bank/bank23.cpp | 49 -
gatb-core/examples/bank/bank24.cpp | 77 -
gatb-core/examples/bank/bank25.cpp | 93 -
gatb-core/examples/bank/bank26.cpp | 54 -
gatb-core/examples/bank/bank27.cpp | 70 -
gatb-core/examples/bank/bank28.cpp | 64 -
gatb-core/examples/kmer/.DS_Store | Bin 0 -> 6148 bytes
gatb-core/examples/storage/.DS_Store | Bin 0 -> 6148 bytes
gatb-core/scripts/NewProject/CMakeLists.txt | 6 +-
gatb-core/scripts/delivery_compile.sh | 2 +-
gatb-core/scripts/make_official_release.sh | 2 +-
gatb-core/src/.DS_Store | Bin 0 -> 6148 bytes
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gatb-core/src/gatb/bank/.DS_Store | Bin 0 -> 6148 bytes
gatb-core/src/gatb/bank/api/.DS_Store | Bin 0 -> 6148 bytes
gatb-core/src/gatb/bank/api/Sequence.hpp | 116 -
gatb-core/src/gatb/bank/impl/AbstractBank.hpp | 2 +-
gatb-core/src/gatb/bank/impl/Bank.cpp | 18 -
gatb-core/src/gatb/bank/impl/BankBinary.cpp | 2 +-
gatb-core/src/gatb/bank/impl/BankFasta.cpp | 6 +-
gatb-core/src/gatb/bcalm2/bcalm_algo.cpp | 636 +-
gatb-core/src/gatb/bcalm2/bcalm_algo.hpp | 88 +-
gatb-core/src/gatb/bcalm2/bglue_algo.cpp | 922 +-
gatb-core/src/gatb/bcalm2/bglue_algo.hpp | 158 +-
gatb-core/src/gatb/bcalm2/lockstdqueue.h | 52 +
gatb-core/src/gatb/bcalm2/logging.cpp | 40 -
gatb-core/src/gatb/bcalm2/logging.hpp | 6 -
gatb-core/src/gatb/bcalm2/ograph.cpp | 7 +-
gatb-core/src/gatb/debruijn/impl/ExtremityInfo.hpp | 4 -
gatb-core/src/gatb/debruijn/impl/Graph.cpp | 17 +-
gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp | 621 +-
gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp | 39 +-
.../src/gatb/debruijn/impl/IterativeExtensions.cpp | 24 +-
gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp | 374 -
gatb-core/src/gatb/debruijn/impl/LinkTigs.hpp | 40 -
.../src/gatb/debruijn/impl/Simplifications.cpp | 217 +-
.../src/gatb/debruijn/impl/Simplifications.hpp | 15 +-
.../debruijn/impl/UnitigsConstructionAlgorithm.cpp | 192 +-
.../debruijn/impl/UnitigsConstructionAlgorithm.hpp | 29 +-
gatb-core/src/gatb/debruijn/impl/dag_vector.hpp | 325 -
gatb-core/src/gatb/debruijn/impl/rank_vector.hpp | 137 -
gatb-core/src/gatb/gatb_core.hpp | 5 +-
gatb-core/src/gatb/kmer/.DS_Store | Bin 0 -> 6148 bytes
.../src/gatb/kmer/impl/.DS_Store | Bin 12288 -> 10244 bytes
.../src/gatb/kmer/impl/ConfigurationAlgorithm.cpp | 4 +-
.../src/gatb/kmer/impl/CountProcessorHistogram.hpp | 3 -
gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp | 20 +-
gatb-core/src/gatb/kmer/impl/Model.hpp | 256 +-
gatb-core/src/gatb/kmer/impl/PartiInfo.hpp | 28 +-
gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp | 1479 +--
gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp | 236 +-
.../src/gatb/kmer/impl/RepartitionAlgorithm.cpp | 10 +-
.../src/gatb/kmer/impl/Sequence2SuperKmer.hpp | 9 -
.../src/gatb/kmer/impl/SortingCountAlgorithm.cpp | 581 +-
.../src/gatb/kmer/impl/SortingCountAlgorithm.hpp | 6 -
gatb-core/src/gatb/system/api/Exception.hpp | 19 +-
gatb-core/src/gatb/system/impl/FileSystemLinux.cpp | 2 +-
gatb-core/src/gatb/system/impl/FileSystemMacos.cpp | 2 +-
.../src/gatb/system/impl/SystemInfoCommon.cpp | 1 +
gatb-core/src/gatb/system/impl/ThreadLinux.cpp | 15 +-
gatb-core/src/gatb/system/impl/ThreadMacos.cpp | 16 +-
.../gatb/template/TemplateSpecialization10.cpp.in | 8 +-
gatb-core/src/gatb/tools/.DS_Store | Bin 0 -> 6148 bytes
.../src/gatb/tools/collections/impl/Hash16.hpp | 5 -
.../gatb/tools/collections/impl/IteratorFile.hpp | 10 +-
.../src/gatb/tools/collections/impl/MapMPHF.hpp | 311 +-
gatb-core/src/gatb/tools/compression/DnaCoder.cpp | 1784 ----
gatb-core/src/gatb/tools/compression/DnaCoder.hpp | 307 -
.../src/gatb/tools/compression/HeaderCoder.cpp | 789 --
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gatb-core/src/gatb/tools/compression/Leon.cpp | 2434 -----
gatb-core/src/gatb/tools/compression/Leon.hpp | 490 -
.../src/gatb/tools/compression/RangeCoder.cpp | 2 +-
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gatb-core/src/gatb/tools/designpattern/.DS_Store | Bin 0 -> 6148 bytes
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gatb-core/src/gatb/tools/misc/api/IHistogram.hpp | 5 -
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gatb-core/src/gatb/tools/misc/impl/Histogram.cpp | 15 -
gatb-core/src/gatb/tools/misc/impl/Histogram.hpp | 16 +-
gatb-core/src/gatb/tools/misc/impl/Pool.hpp | 34 +-
gatb-core/src/gatb/tools/misc/impl/Stringify.hpp | 4 -
gatb-core/src/gatb/tools/misc/impl/Tool.cpp | 2 +-
gatb-core/src/gatb/tools/storage/impl/Storage.cpp | 285 -
gatb-core/src/gatb/tools/storage/impl/Storage.hpp | 98 +-
gatb-core/src/gatb/tools/storage/impl/Storage.tpp | 4 +-
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.../db/NIST7035_TAAGGCGA_L001_R1_001_5OK.fastq.gz | Bin 3891060 -> 0 bytes
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gatb-core/test/db/leon2.fastq | 28 -
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gatb-core/test/jenkins/leon/README.md | 62 -
gatb-core/test/jenkins/leon/download.sh | 72 -
gatb-core/test/jenkins/leon/test_integrity.sh | 31 -
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gatb-core/test/jenkins/publish-doc-api.sh | 20 +-
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gatb-core/test/unit/src/bank/TestBank.cpp | 2 +-
gatb-core/test/unit/src/bank/TestLeon.cpp | 434 -
gatb-core/test/unit/src/debruijn/TestDebruijn.cpp | 2 +-
.../src/debruijn/TestSimplificationsUnitigs.cpp | 65 +-
gatb-core/test/unit/src/kmer/TestDSK.cpp | 4 +-
gatb-core/test/unit/src/kmer/TestMPHF.cpp | 7 +-
gatb-core/test/unit/src/main.cpp | 28 +-
.../test/unit/src/tools/collections/TestMap.cpp | 10 +-
gatb-core/thirdparty/boost/aligned_storage.hpp | 143 -
gatb-core/thirdparty/boost/assert.hpp | 78 -
gatb-core/thirdparty/boost/blank.hpp | 106 -
gatb-core/thirdparty/boost/blank_fwd.hpp | 22 -
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gatb-core/thirdparty/boost/checked_delete.hpp | 17 -
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gatb-core/thirdparty/boost/config/auto_link.hpp | 439 -
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gatb-core/thirdparty/boost/config/compiler/pgi.hpp | 155 -
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gatb-core/thirdparty/boost/config/no_tr1/cmath.hpp | 28 -
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gatb-core/thirdparty/boost/config/platform/aix.hpp | 33 -
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gatb-core/thirdparty/boost/math/complex/acos.hpp | 245 -
gatb-core/thirdparty/boost/math/complex/acosh.hpp | 34 -
gatb-core/thirdparty/boost/math/complex/asin.hpp | 252 -
gatb-core/thirdparty/boost/math/complex/asinh.hpp | 32 -
gatb-core/thirdparty/boost/math/complex/atan.hpp | 36 -
gatb-core/thirdparty/boost/math/complex/atanh.hpp | 214 -
.../thirdparty/boost/math/complex/details.hpp | 96 -
gatb-core/thirdparty/boost/math/complex/fabs.hpp | 23 -
.../boost/math/concepts/distributions.hpp | 491 -
.../boost/math/concepts/real_concept.hpp | 451 -
.../boost/math/concepts/real_type_concept.hpp | 122 -
.../boost/math/concepts/std_real_concept.hpp | 405 -
.../boost/math/constants/calculate_constants.hpp | 968 --
.../thirdparty/boost/math/constants/constants.hpp | 359 -
gatb-core/thirdparty/boost/math/constants/info.hpp | 163 -
.../boost/math/cstdfloat/cstdfloat_cmath.hpp | 600 --
.../boost/math/cstdfloat/cstdfloat_complex.hpp | 38 -
.../boost/math/cstdfloat/cstdfloat_complex_std.hpp | 641 --
.../boost/math/cstdfloat/cstdfloat_iostream.hpp | 771 --
.../boost/math/cstdfloat/cstdfloat_limits.hpp | 75 -
.../boost/math/cstdfloat/cstdfloat_types.hpp | 440 -
gatb-core/thirdparty/boost/math/distributions.hpp | 53 -
.../boost/math/distributions/arcsine.hpp | 535 -
.../boost/math/distributions/bernoulli.hpp | 336 -
.../thirdparty/boost/math/distributions/beta.hpp | 541 -
.../boost/math/distributions/binomial.hpp | 728 --
.../thirdparty/boost/math/distributions/cauchy.hpp | 362 -
.../boost/math/distributions/chi_squared.hpp | 364 -
.../boost/math/distributions/complement.hpp | 195 -
.../distributions/detail/common_error_handling.hpp | 194 -
.../distributions/detail/derived_accessors.hpp | 163 -
.../math/distributions/detail/generic_mode.hpp | 149 -
.../math/distributions/detail/generic_quantile.hpp | 91 -
.../distributions/detail/hypergeometric_cdf.hpp | 100 -
.../distributions/detail/hypergeometric_pdf.hpp | 488 -
.../detail/hypergeometric_quantile.hpp | 199 -
.../distributions/detail/inv_discrete_quantile.hpp | 571 --
.../boost/math/distributions/exponential.hpp | 275 -
.../boost/math/distributions/extreme_value.hpp | 300 -
.../boost/math/distributions/find_location.hpp | 146 -
.../boost/math/distributions/find_scale.hpp | 211 -
.../boost/math/distributions/fisher_f.hpp | 387 -
.../thirdparty/boost/math/distributions/fwd.hpp | 153 -
.../thirdparty/boost/math/distributions/gamma.hpp | 349 -
.../boost/math/distributions/geometric.hpp | 516 -
.../boost/math/distributions/hyperexponential.hpp | 634 --
.../boost/math/distributions/hypergeometric.hpp | 293 -
.../math/distributions/inverse_chi_squared.hpp | 391 -
.../boost/math/distributions/inverse_gamma.hpp | 461 -
.../boost/math/distributions/inverse_gaussian.hpp | 512 -
.../boost/math/distributions/laplace.hpp | 350 -
.../boost/math/distributions/logistic.hpp | 299 -
.../boost/math/distributions/lognormal.hpp | 341 -
.../boost/math/distributions/negative_binomial.hpp | 607 --
.../boost/math/distributions/non_central_beta.hpp | 925 --
.../math/distributions/non_central_chi_squared.hpp | 996 --
.../boost/math/distributions/non_central_f.hpp | 410 -
.../boost/math/distributions/non_central_t.hpp | 1202 ---
.../thirdparty/boost/math/distributions/normal.hpp | 329 -
.../thirdparty/boost/math/distributions/pareto.hpp | 444 -
.../boost/math/distributions/poisson.hpp | 527 -
.../boost/math/distributions/rayleigh.hpp | 301 -
.../boost/math/distributions/skew_normal.hpp | 719 --
.../boost/math/distributions/students_t.hpp | 490 -
.../boost/math/distributions/triangular.hpp | 523 -
.../boost/math/distributions/uniform.hpp | 379 -
.../boost/math/distributions/weibull.hpp | 395 -
gatb-core/thirdparty/boost/math/octonion.hpp | 4250 --------
.../boost/math/policies/error_handling.hpp | 805 --
.../thirdparty/boost/math/policies/policy.hpp | 996 --
gatb-core/thirdparty/boost/math/quaternion.hpp | 1773 ----
.../thirdparty/boost/math/special_functions.hpp | 71 -
.../boost/math/special_functions/acosh.hpp | 104 -
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.../boost/math/special_functions/atanh.hpp | 117 -
.../boost/math/special_functions/bernoulli.hpp | 143 -
.../boost/math/special_functions/bessel.hpp | 786 --
.../boost/math/special_functions/bessel_prime.hpp | 359 -
.../boost/math/special_functions/beta.hpp | 1529 ---
.../boost/math/special_functions/binomial.hpp | 82 -
.../boost/math/special_functions/cbrt.hpp | 180 -
.../boost/math/special_functions/cos_pi.hpp | 82 -
.../special_functions/detail/airy_ai_bi_zero.hpp | 160 -
.../special_functions/detail/bernoulli_details.hpp | 653 --
.../detail/bessel_derivatives_linear.hpp | 75 -
.../math/special_functions/detail/bessel_i0.hpp | 129 -
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.../math/special_functions/detail/bessel_ik.hpp | 449 -
.../math/special_functions/detail/bessel_j0.hpp | 193 -
.../math/special_functions/detail/bessel_j1.hpp | 199 -
.../math/special_functions/detail/bessel_jn.hpp | 134 -
.../math/special_functions/detail/bessel_jy.hpp | 589 --
.../special_functions/detail/bessel_jy_asym.hpp | 205 -
.../detail/bessel_jy_derivatives_asym.hpp | 141 -
.../detail/bessel_jy_derivatives_series.hpp | 220 -
.../special_functions/detail/bessel_jy_series.hpp | 261 -
.../special_functions/detail/bessel_jy_zero.hpp | 617 --
.../math/special_functions/detail/bessel_k0.hpp | 152 -
.../math/special_functions/detail/bessel_k1.hpp | 148 -
.../math/special_functions/detail/bessel_kn.hpp | 86 -
.../math/special_functions/detail/bessel_y0.hpp | 224 -
.../math/special_functions/detail/bessel_y1.hpp | 196 -
.../math/special_functions/detail/bessel_yn.hpp | 104 -
.../math/special_functions/detail/erf_inv.hpp | 536 -
.../math/special_functions/detail/fp_traits.hpp | 580 --
.../math/special_functions/detail/gamma_inva.hpp | 233 -
.../math/special_functions/detail/ibeta_inv_ab.hpp | 328 -
.../special_functions/detail/ibeta_inverse.hpp | 993 --
.../boost/math/special_functions/detail/iconv.hpp | 42 -
.../special_functions/detail/igamma_inverse.hpp | 551 -
.../math/special_functions/detail/igamma_large.hpp | 768 --
.../math/special_functions/detail/lanczos_sse2.hpp | 204 -
.../math/special_functions/detail/lgamma_small.hpp | 522 -
.../math/special_functions/detail/polygamma.hpp | 538 -
.../math/special_functions/detail/round_fwd.hpp | 93 -
.../detail/t_distribution_inv.hpp | 549 -
.../detail/unchecked_bernoulli.hpp | 700 --
.../detail/unchecked_factorial.hpp | 625 --
.../boost/math/special_functions/digamma.hpp | 628 --
.../boost/math/special_functions/ellint_1.hpp | 201 -
.../boost/math/special_functions/ellint_2.hpp | 198 -
.../boost/math/special_functions/ellint_3.hpp | 376 -
.../boost/math/special_functions/ellint_d.hpp | 180 -
.../boost/math/special_functions/ellint_rc.hpp | 114 -
.../boost/math/special_functions/ellint_rd.hpp | 201 -
.../boost/math/special_functions/ellint_rf.hpp | 174 -
.../boost/math/special_functions/ellint_rg.hpp | 136 -
.../boost/math/special_functions/ellint_rj.hpp | 302 -
.../boost/math/special_functions/erf.hpp | 1155 ---
.../boost/math/special_functions/expint.hpp | 1672 ---
.../boost/math/special_functions/expm1.hpp | 343 -
.../boost/math/special_functions/factorials.hpp | 268 -
.../boost/math/special_functions/fpclassify.hpp | 606 --
.../boost/math/special_functions/gamma.hpp | 2035 ----
.../boost/math/special_functions/hankel.hpp | 180 -
.../boost/math/special_functions/hermite.hpp | 76 -
.../boost/math/special_functions/heuman_lambda.hpp | 87 -
.../boost/math/special_functions/hypot.hpp | 86 -
.../math/special_functions/jacobi_elliptic.hpp | 321 -
.../boost/math/special_functions/jacobi_zeta.hpp | 74 -
.../boost/math/special_functions/laguerre.hpp | 139 -
.../boost/math/special_functions/lanczos.hpp | 1296 ---
.../boost/math/special_functions/legendre.hpp | 194 -
.../boost/math/special_functions/log1p.hpp | 503 -
.../boost/math/special_functions/math_fwd.hpp | 1573 ---
.../boost/math/special_functions/modf.hpp | 71 -
.../boost/math/special_functions/next.hpp | 500 -
.../special_functions/nonfinite_num_facets.hpp | 592 --
.../boost/math/special_functions/owens_t.hpp | 1071 --
.../boost/math/special_functions/polygamma.hpp | 83 -
.../boost/math/special_functions/pow.hpp | 148 -
.../boost/math/special_functions/powm1.hpp | 61 -
.../boost/math/special_functions/prime.hpp | 1220 ---
.../boost/math/special_functions/round.hpp | 132 -
.../boost/math/special_functions/sign.hpp | 194 -
.../boost/math/special_functions/sin_pi.hpp | 78 -
.../boost/math/special_functions/sinc.hpp | 145 -
.../boost/math/special_functions/sinhc.hpp | 156 -
.../math/special_functions/spherical_harmonic.hpp | 205 -
.../boost/math/special_functions/sqrt1pm1.hpp | 48 -
.../boost/math/special_functions/trigamma.hpp | 469 -
.../boost/math/special_functions/trunc.hpp | 111 -
.../boost/math/special_functions/zeta.hpp | 1086 --
.../thirdparty/boost/math/tools/big_constant.hpp | 86 -
gatb-core/thirdparty/boost/math/tools/config.hpp | 409 -
.../math/tools/detail/polynomial_horner1_10.hpp | 84 -
.../math/tools/detail/polynomial_horner1_11.hpp | 90 -
.../math/tools/detail/polynomial_horner1_12.hpp | 96 -
.../math/tools/detail/polynomial_horner1_13.hpp | 102 -
.../math/tools/detail/polynomial_horner1_14.hpp | 108 -
.../math/tools/detail/polynomial_horner1_15.hpp | 114 -
.../math/tools/detail/polynomial_horner1_16.hpp | 120 -
.../math/tools/detail/polynomial_horner1_17.hpp | 126 -
.../math/tools/detail/polynomial_horner1_18.hpp | 132 -
.../math/tools/detail/polynomial_horner1_19.hpp | 138 -
.../math/tools/detail/polynomial_horner1_2.hpp | 36 -
.../math/tools/detail/polynomial_horner1_20.hpp | 144 -
.../math/tools/detail/polynomial_horner1_3.hpp | 42 -
.../math/tools/detail/polynomial_horner1_4.hpp | 48 -
.../math/tools/detail/polynomial_horner1_5.hpp | 54 -
.../math/tools/detail/polynomial_horner1_6.hpp | 60 -
.../math/tools/detail/polynomial_horner1_7.hpp | 66 -
.../math/tools/detail/polynomial_horner1_8.hpp | 72 -
.../math/tools/detail/polynomial_horner1_9.hpp | 78 -
.../math/tools/detail/polynomial_horner2_10.hpp | 90 -
.../math/tools/detail/polynomial_horner2_11.hpp | 97 -
.../math/tools/detail/polynomial_horner2_12.hpp | 104 -
.../math/tools/detail/polynomial_horner2_13.hpp | 111 -
.../math/tools/detail/polynomial_horner2_14.hpp | 118 -
.../math/tools/detail/polynomial_horner2_15.hpp | 125 -
.../math/tools/detail/polynomial_horner2_16.hpp | 132 -
.../math/tools/detail/polynomial_horner2_17.hpp | 139 -
.../math/tools/detail/polynomial_horner2_18.hpp | 146 -
.../math/tools/detail/polynomial_horner2_19.hpp | 153 -
.../math/tools/detail/polynomial_horner2_2.hpp | 48 -
.../math/tools/detail/polynomial_horner2_20.hpp | 160 -
.../math/tools/detail/polynomial_horner2_3.hpp | 48 -
.../math/tools/detail/polynomial_horner2_4.hpp | 48 -
.../math/tools/detail/polynomial_horner2_5.hpp | 55 -
.../math/tools/detail/polynomial_horner2_6.hpp | 62 -
.../math/tools/detail/polynomial_horner2_7.hpp | 69 -
.../math/tools/detail/polynomial_horner2_8.hpp | 76 -
.../math/tools/detail/polynomial_horner2_9.hpp | 83 -
.../math/tools/detail/polynomial_horner3_10.hpp | 156 -
.../math/tools/detail/polynomial_horner3_11.hpp | 181 -
.../math/tools/detail/polynomial_horner3_12.hpp | 208 -
.../math/tools/detail/polynomial_horner3_13.hpp | 237 -
.../math/tools/detail/polynomial_horner3_14.hpp | 268 -
.../math/tools/detail/polynomial_horner3_15.hpp | 301 -
.../math/tools/detail/polynomial_horner3_16.hpp | 336 -
.../math/tools/detail/polynomial_horner3_17.hpp | 373 -
.../math/tools/detail/polynomial_horner3_18.hpp | 412 -
.../math/tools/detail/polynomial_horner3_19.hpp | 453 -
.../math/tools/detail/polynomial_horner3_2.hpp | 48 -
.../math/tools/detail/polynomial_horner3_20.hpp | 496 -
.../math/tools/detail/polynomial_horner3_3.hpp | 48 -
.../math/tools/detail/polynomial_horner3_4.hpp | 48 -
.../math/tools/detail/polynomial_horner3_5.hpp | 61 -
.../math/tools/detail/polynomial_horner3_6.hpp | 76 -
.../math/tools/detail/polynomial_horner3_7.hpp | 93 -
.../math/tools/detail/polynomial_horner3_8.hpp | 112 -
.../math/tools/detail/polynomial_horner3_9.hpp | 133 -
.../math/tools/detail/rational_horner1_10.hpp | 138 -
.../math/tools/detail/rational_horner1_11.hpp | 150 -
.../math/tools/detail/rational_horner1_12.hpp | 162 -
.../math/tools/detail/rational_horner1_13.hpp | 174 -
.../math/tools/detail/rational_horner1_14.hpp | 186 -
.../math/tools/detail/rational_horner1_15.hpp | 198 -
.../math/tools/detail/rational_horner1_16.hpp | 210 -
.../math/tools/detail/rational_horner1_17.hpp | 222 -
.../math/tools/detail/rational_horner1_18.hpp | 234 -
.../math/tools/detail/rational_horner1_19.hpp | 246 -
.../boost/math/tools/detail/rational_horner1_2.hpp | 42 -
.../math/tools/detail/rational_horner1_20.hpp | 258 -
.../boost/math/tools/detail/rational_horner1_3.hpp | 54 -
.../boost/math/tools/detail/rational_horner1_4.hpp | 66 -
.../boost/math/tools/detail/rational_horner1_5.hpp | 78 -
.../boost/math/tools/detail/rational_horner1_6.hpp | 90 -
.../boost/math/tools/detail/rational_horner1_7.hpp | 102 -
.../boost/math/tools/detail/rational_horner1_8.hpp | 114 -
.../boost/math/tools/detail/rational_horner1_9.hpp | 126 -
.../math/tools/detail/rational_horner2_10.hpp | 144 -
.../math/tools/detail/rational_horner2_11.hpp | 160 -
.../math/tools/detail/rational_horner2_12.hpp | 176 -
.../math/tools/detail/rational_horner2_13.hpp | 192 -
.../math/tools/detail/rational_horner2_14.hpp | 208 -
.../math/tools/detail/rational_horner2_15.hpp | 224 -
.../math/tools/detail/rational_horner2_16.hpp | 240 -
.../math/tools/detail/rational_horner2_17.hpp | 256 -
.../math/tools/detail/rational_horner2_18.hpp | 272 -
.../math/tools/detail/rational_horner2_19.hpp | 288 -
.../boost/math/tools/detail/rational_horner2_2.hpp | 48 -
.../math/tools/detail/rational_horner2_20.hpp | 304 -
.../boost/math/tools/detail/rational_horner2_3.hpp | 48 -
.../boost/math/tools/detail/rational_horner2_4.hpp | 48 -
.../boost/math/tools/detail/rational_horner2_5.hpp | 64 -
.../boost/math/tools/detail/rational_horner2_6.hpp | 80 -
.../boost/math/tools/detail/rational_horner2_7.hpp | 96 -
.../boost/math/tools/detail/rational_horner2_8.hpp | 112 -
.../boost/math/tools/detail/rational_horner2_9.hpp | 128 -
.../math/tools/detail/rational_horner3_10.hpp | 396 -
.../math/tools/detail/rational_horner3_11.hpp | 482 -
.../math/tools/detail/rational_horner3_12.hpp | 576 --
.../math/tools/detail/rational_horner3_13.hpp | 678 --
.../math/tools/detail/rational_horner3_14.hpp | 788 --
.../math/tools/detail/rational_horner3_15.hpp | 906 --
.../math/tools/detail/rational_horner3_16.hpp | 1032 --
.../math/tools/detail/rational_horner3_17.hpp | 1166 ---
.../math/tools/detail/rational_horner3_18.hpp | 1308 ---
.../math/tools/detail/rational_horner3_19.hpp | 1458 ---
.../boost/math/tools/detail/rational_horner3_2.hpp | 48 -
.../math/tools/detail/rational_horner3_20.hpp | 1616 ---
.../boost/math/tools/detail/rational_horner3_3.hpp | 48 -
.../boost/math/tools/detail/rational_horner3_4.hpp | 48 -
.../boost/math/tools/detail/rational_horner3_5.hpp | 86 -
.../boost/math/tools/detail/rational_horner3_6.hpp | 132 -
.../boost/math/tools/detail/rational_horner3_7.hpp | 186 -
.../boost/math/tools/detail/rational_horner3_8.hpp | 248 -
.../boost/math/tools/detail/rational_horner3_9.hpp | 318 -
gatb-core/thirdparty/boost/math/tools/fraction.hpp | 252 -
gatb-core/thirdparty/boost/math/tools/minima.hpp | 152 -
.../thirdparty/boost/math/tools/polynomial.hpp | 323 -
.../thirdparty/boost/math/tools/precision.hpp | 392 -
.../thirdparty/boost/math/tools/promotion.hpp | 175 -
gatb-core/thirdparty/boost/math/tools/rational.hpp | 333 -
.../thirdparty/boost/math/tools/real_cast.hpp | 29 -
gatb-core/thirdparty/boost/math/tools/roots.hpp | 542 -
gatb-core/thirdparty/boost/math/tools/series.hpp | 158 -
gatb-core/thirdparty/boost/math/tools/stats.hpp | 88 -
.../thirdparty/boost/math/tools/toms748_solve.hpp | 609 --
gatb-core/thirdparty/boost/math/tools/traits.hpp | 111 -
gatb-core/thirdparty/boost/math/tools/tuple.hpp | 90 -
gatb-core/thirdparty/boost/math/tools/user.hpp | 105 -
.../thirdparty/boost/math/tools/workaround.hpp | 38 -
gatb-core/thirdparty/boost/math/tr1.hpp | 1115 --
gatb-core/thirdparty/boost/math/tr1_c_macros.ipp | 810 --
gatb-core/thirdparty/boost/math_fwd.hpp | 108 -
gatb-core/thirdparty/boost/move/adl_move_swap.hpp | 233 -
gatb-core/thirdparty/boost/move/algorithm.hpp | 282 -
gatb-core/thirdparty/boost/move/core.hpp | 497 -
gatb-core/thirdparty/boost/move/default_delete.hpp | 195 -
.../thirdparty/boost/move/detail/config_begin.hpp | 19 -
.../thirdparty/boost/move/detail/config_end.hpp | 12 -
.../thirdparty/boost/move/detail/fwd_macros.hpp | 465 -
.../boost/move/detail/iterator_traits.hpp | 87 -
.../thirdparty/boost/move/detail/meta_utils.hpp | 559 -
.../boost/move/detail/meta_utils_core.hpp | 120 -
.../thirdparty/boost/move/detail/move_helpers.hpp | 178 -
.../thirdparty/boost/move/detail/type_traits.hpp | 1078 --
.../boost/move/detail/unique_ptr_meta_utils.hpp | 591 --
.../thirdparty/boost/move/detail/workaround.hpp | 55 -
gatb-core/thirdparty/boost/move/iterator.hpp | 312 -
gatb-core/thirdparty/boost/move/make_unique.hpp | 237 -
gatb-core/thirdparty/boost/move/move.hpp | 35 -
gatb-core/thirdparty/boost/move/traits.hpp | 77 -
gatb-core/thirdparty/boost/move/unique_ptr.hpp | 869 --
gatb-core/thirdparty/boost/move/utility.hpp | 149 -
gatb-core/thirdparty/boost/move/utility_core.hpp | 315 -
gatb-core/thirdparty/boost/mpl/O1_size.hpp | 40 -
gatb-core/thirdparty/boost/mpl/O1_size_fwd.hpp | 24 -
gatb-core/thirdparty/boost/mpl/accumulate.hpp | 39 -
gatb-core/thirdparty/boost/mpl/advance.hpp | 76 -
gatb-core/thirdparty/boost/mpl/advance_fwd.hpp | 28 -
gatb-core/thirdparty/boost/mpl/alias.hpp | 21 -
gatb-core/thirdparty/boost/mpl/always.hpp | 38 -
gatb-core/thirdparty/boost/mpl/and.hpp | 60 -
gatb-core/thirdparty/boost/mpl/apply.hpp | 229 -
gatb-core/thirdparty/boost/mpl/apply_fwd.hpp | 107 -
gatb-core/thirdparty/boost/mpl/apply_wrap.hpp | 234 -
gatb-core/thirdparty/boost/mpl/arg.hpp | 131 -
gatb-core/thirdparty/boost/mpl/arg_fwd.hpp | 28 -
gatb-core/thirdparty/boost/mpl/arithmetic.hpp | 25 -
gatb-core/thirdparty/boost/mpl/as_sequence.hpp | 38 -
gatb-core/thirdparty/boost/mpl/assert.hpp | 439 -
gatb-core/thirdparty/boost/mpl/at.hpp | 52 -
gatb-core/thirdparty/boost/mpl/at_fwd.hpp | 24 -
.../thirdparty/boost/mpl/aux_/O1_size_impl.hpp | 87 -
.../thirdparty/boost/mpl/aux_/adl_barrier.hpp | 48 -
.../thirdparty/boost/mpl/aux_/advance_backward.hpp | 128 -
.../thirdparty/boost/mpl/aux_/advance_forward.hpp | 127 -
gatb-core/thirdparty/boost/mpl/aux_/apply_1st.hpp | 35 -
.../thirdparty/boost/mpl/aux_/arg_typedef.hpp | 31 -
.../thirdparty/boost/mpl/aux_/arithmetic_op.hpp | 92 -
gatb-core/thirdparty/boost/mpl/aux_/arity.hpp | 39 -
gatb-core/thirdparty/boost/mpl/aux_/arity_spec.hpp | 67 -
gatb-core/thirdparty/boost/mpl/aux_/at_impl.hpp | 45 -
gatb-core/thirdparty/boost/mpl/aux_/back_impl.hpp | 43 -
gatb-core/thirdparty/boost/mpl/aux_/basic_bind.hpp | 21 -
.../thirdparty/boost/mpl/aux_/begin_end_impl.hpp | 101 -
gatb-core/thirdparty/boost/mpl/aux_/clear_impl.hpp | 35 -
.../thirdparty/boost/mpl/aux_/common_name_wknd.hpp | 34 -
.../thirdparty/boost/mpl/aux_/comparison_op.hpp | 83 -
gatb-core/thirdparty/boost/mpl/aux_/config/adl.hpp | 40 -
.../thirdparty/boost/mpl/aux_/config/arrays.hpp | 30 -
gatb-core/thirdparty/boost/mpl/aux_/config/bcc.hpp | 28 -
.../thirdparty/boost/mpl/aux_/config/bind.hpp | 33 -
.../thirdparty/boost/mpl/aux_/config/compiler.hpp | 66 -
.../thirdparty/boost/mpl/aux_/config/ctps.hpp | 30 -
.../boost/mpl/aux_/config/dependent_nttp.hpp | 35 -
.../boost/mpl/aux_/config/dmc_ambiguous_ctps.hpp | 27 -
gatb-core/thirdparty/boost/mpl/aux_/config/dtp.hpp | 46 -
gatb-core/thirdparty/boost/mpl/aux_/config/eti.hpp | 47 -
.../boost/mpl/aux_/config/forwarding.hpp | 27 -
gatb-core/thirdparty/boost/mpl/aux_/config/gcc.hpp | 23 -
gatb-core/thirdparty/boost/mpl/aux_/config/gpu.hpp | 35 -
.../thirdparty/boost/mpl/aux_/config/has_apply.hpp | 32 -
.../thirdparty/boost/mpl/aux_/config/has_xxx.hpp | 34 -
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gatb-core/thirdparty/boost/mpl/front_inserter.hpp | 33 -
gatb-core/thirdparty/boost/mpl/greater.hpp | 21 -
gatb-core/thirdparty/boost/mpl/greater_equal.hpp | 21 -
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gatb-core/thirdparty/boost/mpl/has_key_fwd.hpp | 25 -
gatb-core/thirdparty/boost/mpl/has_xxx.hpp | 647 --
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gatb-core/thirdparty/boost/mpl/if.hpp | 135 -
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gatb-core/thirdparty/boost/mpl/is_sequence.hpp | 112 -
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gatb-core/thirdparty/boost/mpl/lambda_fwd.hpp | 57 -
gatb-core/thirdparty/boost/mpl/less.hpp | 21 -
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gatb-core/thirdparty/boost/mpl/limits/arity.hpp | 21 -
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gatb-core/thirdparty/boost/mpl/list_c.hpp | 60 -
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gatb-core/thirdparty/boost/mpl/lower_bound.hpp | 143 -
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gatb-core/thirdparty/boost/mpl/min_max.hpp | 46 -
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gatb-core/thirdparty/boost/mpl/negate.hpp | 81 -
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gatb-core/thirdparty/boost/mpl/not_equal_to.hpp | 21 -
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gatb-core/thirdparty/boost/mpl/order_fwd.hpp | 25 -
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gatb-core/thirdparty/boost/mpl/pair_view.hpp | 169 -
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gatb-core/thirdparty/boost/mpl/placeholders.hpp | 100 -
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gatb-core/thirdparty/boost/mpl/replace_if.hpp | 88 -
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