[med-svn] [gatb-core] 03/03: Update upstream source from tag 'upstream/1.3.0+dfsg'
Andreas Tille
tille at debian.org
Thu Nov 16 17:17:46 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository gatb-core.
commit 1e0e3b7a119fc3595a5b3b43029db4c12cfd6d61
Merge: a5d1472 b8c3a15
Author: Andreas Tille <tille at debian.org>
Date: Thu Nov 16 18:16:29 2017 +0100
Update upstream source from tag 'upstream/1.3.0+dfsg'
Update to upstream version '1.3.0+dfsg'
with Debian dir 53d34a3f650e4fe61b2bed4df946c05359476bcf
.travis.yml | 31 -
README.md | 9 +-
gatb-core/.cproject | 140 +
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gatb-core/src/gatb/bank/api/Sequence.hpp | 116 -
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gatb-core/src/gatb/bank/impl/BankFasta.cpp | 6 +-
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gatb-core/src/gatb/kmer/impl/.DS_Store | Bin 0 -> 10244 bytes
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gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp | 20 +-
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gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp | 1479 +--
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gatb-core/thirdparty/boost/math/complex/acosh.hpp | 34 -
gatb-core/thirdparty/boost/math/complex/asin.hpp | 252 -
gatb-core/thirdparty/boost/math/complex/asinh.hpp | 32 -
gatb-core/thirdparty/boost/math/complex/atan.hpp | 36 -
gatb-core/thirdparty/boost/math/complex/atanh.hpp | 214 -
.../thirdparty/boost/math/complex/details.hpp | 96 -
gatb-core/thirdparty/boost/math/complex/fabs.hpp | 23 -
.../boost/math/concepts/distributions.hpp | 491 -
.../boost/math/concepts/real_concept.hpp | 451 -
.../boost/math/concepts/real_type_concept.hpp | 122 -
.../boost/math/concepts/std_real_concept.hpp | 405 -
.../boost/math/constants/calculate_constants.hpp | 968 --
.../thirdparty/boost/math/constants/constants.hpp | 359 -
gatb-core/thirdparty/boost/math/constants/info.hpp | 163 -
.../boost/math/cstdfloat/cstdfloat_cmath.hpp | 600 --
.../boost/math/cstdfloat/cstdfloat_complex.hpp | 38 -
.../boost/math/cstdfloat/cstdfloat_complex_std.hpp | 641 --
.../boost/math/cstdfloat/cstdfloat_iostream.hpp | 771 --
.../boost/math/cstdfloat/cstdfloat_limits.hpp | 75 -
.../boost/math/cstdfloat/cstdfloat_types.hpp | 440 -
gatb-core/thirdparty/boost/math/distributions.hpp | 53 -
.../boost/math/distributions/arcsine.hpp | 535 -
.../boost/math/distributions/bernoulli.hpp | 336 -
.../thirdparty/boost/math/distributions/beta.hpp | 541 -
.../boost/math/distributions/binomial.hpp | 728 --
.../thirdparty/boost/math/distributions/cauchy.hpp | 362 -
.../boost/math/distributions/chi_squared.hpp | 364 -
.../boost/math/distributions/complement.hpp | 195 -
.../distributions/detail/common_error_handling.hpp | 194 -
.../distributions/detail/derived_accessors.hpp | 163 -
.../math/distributions/detail/generic_mode.hpp | 149 -
.../math/distributions/detail/generic_quantile.hpp | 91 -
.../distributions/detail/hypergeometric_cdf.hpp | 100 -
.../distributions/detail/hypergeometric_pdf.hpp | 488 -
.../detail/hypergeometric_quantile.hpp | 199 -
.../distributions/detail/inv_discrete_quantile.hpp | 571 --
.../boost/math/distributions/exponential.hpp | 275 -
.../boost/math/distributions/extreme_value.hpp | 300 -
.../boost/math/distributions/find_location.hpp | 146 -
.../boost/math/distributions/find_scale.hpp | 211 -
.../boost/math/distributions/fisher_f.hpp | 387 -
.../thirdparty/boost/math/distributions/fwd.hpp | 153 -
.../thirdparty/boost/math/distributions/gamma.hpp | 349 -
.../boost/math/distributions/geometric.hpp | 516 -
.../boost/math/distributions/hyperexponential.hpp | 634 --
.../boost/math/distributions/hypergeometric.hpp | 293 -
.../math/distributions/inverse_chi_squared.hpp | 391 -
.../boost/math/distributions/inverse_gamma.hpp | 461 -
.../boost/math/distributions/inverse_gaussian.hpp | 512 -
.../boost/math/distributions/laplace.hpp | 350 -
.../boost/math/distributions/logistic.hpp | 299 -
.../boost/math/distributions/lognormal.hpp | 341 -
.../boost/math/distributions/negative_binomial.hpp | 607 --
.../boost/math/distributions/non_central_beta.hpp | 925 --
.../math/distributions/non_central_chi_squared.hpp | 996 --
.../boost/math/distributions/non_central_f.hpp | 410 -
.../boost/math/distributions/non_central_t.hpp | 1202 ---
.../thirdparty/boost/math/distributions/normal.hpp | 329 -
.../thirdparty/boost/math/distributions/pareto.hpp | 444 -
.../boost/math/distributions/poisson.hpp | 527 -
.../boost/math/distributions/rayleigh.hpp | 301 -
.../boost/math/distributions/skew_normal.hpp | 719 --
.../boost/math/distributions/students_t.hpp | 490 -
.../boost/math/distributions/triangular.hpp | 523 -
.../boost/math/distributions/uniform.hpp | 379 -
.../boost/math/distributions/weibull.hpp | 395 -
gatb-core/thirdparty/boost/math/octonion.hpp | 4250 --------
.../boost/math/policies/error_handling.hpp | 805 --
.../thirdparty/boost/math/policies/policy.hpp | 996 --
gatb-core/thirdparty/boost/math/quaternion.hpp | 1773 ----
.../thirdparty/boost/math/special_functions.hpp | 71 -
.../boost/math/special_functions/acosh.hpp | 104 -
.../boost/math/special_functions/airy.hpp | 469 -
.../boost/math/special_functions/asinh.hpp | 106 -
.../boost/math/special_functions/atanh.hpp | 117 -
.../boost/math/special_functions/bernoulli.hpp | 143 -
.../boost/math/special_functions/bessel.hpp | 786 --
.../boost/math/special_functions/bessel_prime.hpp | 359 -
.../boost/math/special_functions/beta.hpp | 1529 ---
.../boost/math/special_functions/binomial.hpp | 82 -
.../boost/math/special_functions/cbrt.hpp | 180 -
.../boost/math/special_functions/cos_pi.hpp | 82 -
.../special_functions/detail/airy_ai_bi_zero.hpp | 160 -
.../special_functions/detail/bernoulli_details.hpp | 653 --
.../detail/bessel_derivatives_linear.hpp | 75 -
.../math/special_functions/detail/bessel_i0.hpp | 129 -
.../math/special_functions/detail/bessel_i1.hpp | 133 -
.../math/special_functions/detail/bessel_ik.hpp | 449 -
.../math/special_functions/detail/bessel_j0.hpp | 193 -
.../math/special_functions/detail/bessel_j1.hpp | 199 -
.../math/special_functions/detail/bessel_jn.hpp | 134 -
.../math/special_functions/detail/bessel_jy.hpp | 589 --
.../special_functions/detail/bessel_jy_asym.hpp | 205 -
.../detail/bessel_jy_derivatives_asym.hpp | 141 -
.../detail/bessel_jy_derivatives_series.hpp | 220 -
.../special_functions/detail/bessel_jy_series.hpp | 261 -
.../special_functions/detail/bessel_jy_zero.hpp | 617 --
.../math/special_functions/detail/bessel_k0.hpp | 152 -
.../math/special_functions/detail/bessel_k1.hpp | 148 -
.../math/special_functions/detail/bessel_kn.hpp | 86 -
.../math/special_functions/detail/bessel_y0.hpp | 224 -
.../math/special_functions/detail/bessel_y1.hpp | 196 -
.../math/special_functions/detail/bessel_yn.hpp | 104 -
.../math/special_functions/detail/erf_inv.hpp | 536 -
.../math/special_functions/detail/fp_traits.hpp | 580 --
.../math/special_functions/detail/gamma_inva.hpp | 233 -
.../math/special_functions/detail/ibeta_inv_ab.hpp | 328 -
.../special_functions/detail/ibeta_inverse.hpp | 993 --
.../boost/math/special_functions/detail/iconv.hpp | 42 -
.../special_functions/detail/igamma_inverse.hpp | 551 -
.../math/special_functions/detail/igamma_large.hpp | 768 --
.../math/special_functions/detail/lanczos_sse2.hpp | 204 -
.../math/special_functions/detail/lgamma_small.hpp | 522 -
.../math/special_functions/detail/polygamma.hpp | 538 -
.../math/special_functions/detail/round_fwd.hpp | 93 -
.../detail/t_distribution_inv.hpp | 549 -
.../detail/unchecked_bernoulli.hpp | 700 --
.../detail/unchecked_factorial.hpp | 625 --
.../boost/math/special_functions/digamma.hpp | 628 --
.../boost/math/special_functions/ellint_1.hpp | 201 -
.../boost/math/special_functions/ellint_2.hpp | 198 -
.../boost/math/special_functions/ellint_3.hpp | 376 -
.../boost/math/special_functions/ellint_d.hpp | 180 -
.../boost/math/special_functions/ellint_rc.hpp | 114 -
.../boost/math/special_functions/ellint_rd.hpp | 201 -
.../boost/math/special_functions/ellint_rf.hpp | 174 -
.../boost/math/special_functions/ellint_rg.hpp | 136 -
.../boost/math/special_functions/ellint_rj.hpp | 302 -
.../boost/math/special_functions/erf.hpp | 1155 ---
.../boost/math/special_functions/expint.hpp | 1672 ---
.../boost/math/special_functions/expm1.hpp | 343 -
.../boost/math/special_functions/factorials.hpp | 268 -
.../boost/math/special_functions/fpclassify.hpp | 606 --
.../boost/math/special_functions/gamma.hpp | 2035 ----
.../boost/math/special_functions/hankel.hpp | 180 -
.../boost/math/special_functions/hermite.hpp | 76 -
.../boost/math/special_functions/heuman_lambda.hpp | 87 -
.../boost/math/special_functions/hypot.hpp | 86 -
.../math/special_functions/jacobi_elliptic.hpp | 321 -
.../boost/math/special_functions/jacobi_zeta.hpp | 74 -
.../boost/math/special_functions/laguerre.hpp | 139 -
.../boost/math/special_functions/lanczos.hpp | 1296 ---
.../boost/math/special_functions/legendre.hpp | 194 -
.../boost/math/special_functions/log1p.hpp | 503 -
.../boost/math/special_functions/math_fwd.hpp | 1573 ---
.../boost/math/special_functions/modf.hpp | 71 -
.../boost/math/special_functions/next.hpp | 500 -
.../special_functions/nonfinite_num_facets.hpp | 592 --
.../boost/math/special_functions/owens_t.hpp | 1071 --
.../boost/math/special_functions/polygamma.hpp | 83 -
.../boost/math/special_functions/pow.hpp | 148 -
.../boost/math/special_functions/powm1.hpp | 61 -
.../boost/math/special_functions/prime.hpp | 1220 ---
.../boost/math/special_functions/round.hpp | 132 -
.../boost/math/special_functions/sign.hpp | 194 -
.../boost/math/special_functions/sin_pi.hpp | 78 -
.../boost/math/special_functions/sinc.hpp | 145 -
.../boost/math/special_functions/sinhc.hpp | 156 -
.../math/special_functions/spherical_harmonic.hpp | 205 -
.../boost/math/special_functions/sqrt1pm1.hpp | 48 -
.../boost/math/special_functions/trigamma.hpp | 469 -
.../boost/math/special_functions/trunc.hpp | 111 -
.../boost/math/special_functions/zeta.hpp | 1086 --
.../thirdparty/boost/math/tools/big_constant.hpp | 86 -
gatb-core/thirdparty/boost/math/tools/config.hpp | 409 -
.../math/tools/detail/polynomial_horner1_10.hpp | 84 -
.../math/tools/detail/polynomial_horner1_11.hpp | 90 -
.../math/tools/detail/polynomial_horner1_12.hpp | 96 -
.../math/tools/detail/polynomial_horner1_13.hpp | 102 -
.../math/tools/detail/polynomial_horner1_14.hpp | 108 -
.../math/tools/detail/polynomial_horner1_15.hpp | 114 -
.../math/tools/detail/polynomial_horner1_16.hpp | 120 -
.../math/tools/detail/polynomial_horner1_17.hpp | 126 -
.../math/tools/detail/polynomial_horner1_18.hpp | 132 -
.../math/tools/detail/polynomial_horner1_19.hpp | 138 -
.../math/tools/detail/polynomial_horner1_2.hpp | 36 -
.../math/tools/detail/polynomial_horner1_20.hpp | 144 -
.../math/tools/detail/polynomial_horner1_3.hpp | 42 -
.../math/tools/detail/polynomial_horner1_4.hpp | 48 -
.../math/tools/detail/polynomial_horner1_5.hpp | 54 -
.../math/tools/detail/polynomial_horner1_6.hpp | 60 -
.../math/tools/detail/polynomial_horner1_7.hpp | 66 -
.../math/tools/detail/polynomial_horner1_8.hpp | 72 -
.../math/tools/detail/polynomial_horner1_9.hpp | 78 -
.../math/tools/detail/polynomial_horner2_10.hpp | 90 -
.../math/tools/detail/polynomial_horner2_11.hpp | 97 -
.../math/tools/detail/polynomial_horner2_12.hpp | 104 -
.../math/tools/detail/polynomial_horner2_13.hpp | 111 -
.../math/tools/detail/polynomial_horner2_14.hpp | 118 -
.../math/tools/detail/polynomial_horner2_15.hpp | 125 -
.../math/tools/detail/polynomial_horner2_16.hpp | 132 -
.../math/tools/detail/polynomial_horner2_17.hpp | 139 -
.../math/tools/detail/polynomial_horner2_18.hpp | 146 -
.../math/tools/detail/polynomial_horner2_19.hpp | 153 -
.../math/tools/detail/polynomial_horner2_2.hpp | 48 -
.../math/tools/detail/polynomial_horner2_20.hpp | 160 -
.../math/tools/detail/polynomial_horner2_3.hpp | 48 -
.../math/tools/detail/polynomial_horner2_4.hpp | 48 -
.../math/tools/detail/polynomial_horner2_5.hpp | 55 -
.../math/tools/detail/polynomial_horner2_6.hpp | 62 -
.../math/tools/detail/polynomial_horner2_7.hpp | 69 -
.../math/tools/detail/polynomial_horner2_8.hpp | 76 -
.../math/tools/detail/polynomial_horner2_9.hpp | 83 -
.../math/tools/detail/polynomial_horner3_10.hpp | 156 -
.../math/tools/detail/polynomial_horner3_11.hpp | 181 -
.../math/tools/detail/polynomial_horner3_12.hpp | 208 -
.../math/tools/detail/polynomial_horner3_13.hpp | 237 -
.../math/tools/detail/polynomial_horner3_14.hpp | 268 -
.../math/tools/detail/polynomial_horner3_15.hpp | 301 -
.../math/tools/detail/polynomial_horner3_16.hpp | 336 -
.../math/tools/detail/polynomial_horner3_17.hpp | 373 -
.../math/tools/detail/polynomial_horner3_18.hpp | 412 -
.../math/tools/detail/polynomial_horner3_19.hpp | 453 -
.../math/tools/detail/polynomial_horner3_2.hpp | 48 -
.../math/tools/detail/polynomial_horner3_20.hpp | 496 -
.../math/tools/detail/polynomial_horner3_3.hpp | 48 -
.../math/tools/detail/polynomial_horner3_4.hpp | 48 -
.../math/tools/detail/polynomial_horner3_5.hpp | 61 -
.../math/tools/detail/polynomial_horner3_6.hpp | 76 -
.../math/tools/detail/polynomial_horner3_7.hpp | 93 -
.../math/tools/detail/polynomial_horner3_8.hpp | 112 -
.../math/tools/detail/polynomial_horner3_9.hpp | 133 -
.../math/tools/detail/rational_horner1_10.hpp | 138 -
.../math/tools/detail/rational_horner1_11.hpp | 150 -
.../math/tools/detail/rational_horner1_12.hpp | 162 -
.../math/tools/detail/rational_horner1_13.hpp | 174 -
.../math/tools/detail/rational_horner1_14.hpp | 186 -
.../math/tools/detail/rational_horner1_15.hpp | 198 -
.../math/tools/detail/rational_horner1_16.hpp | 210 -
.../math/tools/detail/rational_horner1_17.hpp | 222 -
.../math/tools/detail/rational_horner1_18.hpp | 234 -
.../math/tools/detail/rational_horner1_19.hpp | 246 -
.../boost/math/tools/detail/rational_horner1_2.hpp | 42 -
.../math/tools/detail/rational_horner1_20.hpp | 258 -
.../boost/math/tools/detail/rational_horner1_3.hpp | 54 -
.../boost/math/tools/detail/rational_horner1_4.hpp | 66 -
.../boost/math/tools/detail/rational_horner1_5.hpp | 78 -
.../boost/math/tools/detail/rational_horner1_6.hpp | 90 -
.../boost/math/tools/detail/rational_horner1_7.hpp | 102 -
.../boost/math/tools/detail/rational_horner1_8.hpp | 114 -
.../boost/math/tools/detail/rational_horner1_9.hpp | 126 -
.../math/tools/detail/rational_horner2_10.hpp | 144 -
.../math/tools/detail/rational_horner2_11.hpp | 160 -
.../math/tools/detail/rational_horner2_12.hpp | 176 -
.../math/tools/detail/rational_horner2_13.hpp | 192 -
.../math/tools/detail/rational_horner2_14.hpp | 208 -
.../math/tools/detail/rational_horner2_15.hpp | 224 -
.../math/tools/detail/rational_horner2_16.hpp | 240 -
.../math/tools/detail/rational_horner2_17.hpp | 256 -
.../math/tools/detail/rational_horner2_18.hpp | 272 -
.../math/tools/detail/rational_horner2_19.hpp | 288 -
.../boost/math/tools/detail/rational_horner2_2.hpp | 48 -
.../math/tools/detail/rational_horner2_20.hpp | 304 -
.../boost/math/tools/detail/rational_horner2_3.hpp | 48 -
.../boost/math/tools/detail/rational_horner2_4.hpp | 48 -
.../boost/math/tools/detail/rational_horner2_5.hpp | 64 -
.../boost/math/tools/detail/rational_horner2_6.hpp | 80 -
.../boost/math/tools/detail/rational_horner2_7.hpp | 96 -
.../boost/math/tools/detail/rational_horner2_8.hpp | 112 -
.../boost/math/tools/detail/rational_horner2_9.hpp | 128 -
.../math/tools/detail/rational_horner3_10.hpp | 396 -
.../math/tools/detail/rational_horner3_11.hpp | 482 -
.../math/tools/detail/rational_horner3_12.hpp | 576 --
.../math/tools/detail/rational_horner3_13.hpp | 678 --
.../math/tools/detail/rational_horner3_14.hpp | 788 --
.../math/tools/detail/rational_horner3_15.hpp | 906 --
.../math/tools/detail/rational_horner3_16.hpp | 1032 --
.../math/tools/detail/rational_horner3_17.hpp | 1166 ---
.../math/tools/detail/rational_horner3_18.hpp | 1308 ---
.../math/tools/detail/rational_horner3_19.hpp | 1458 ---
.../boost/math/tools/detail/rational_horner3_2.hpp | 48 -
.../math/tools/detail/rational_horner3_20.hpp | 1616 ---
.../boost/math/tools/detail/rational_horner3_3.hpp | 48 -
.../boost/math/tools/detail/rational_horner3_4.hpp | 48 -
.../boost/math/tools/detail/rational_horner3_5.hpp | 86 -
.../boost/math/tools/detail/rational_horner3_6.hpp | 132 -
.../boost/math/tools/detail/rational_horner3_7.hpp | 186 -
.../boost/math/tools/detail/rational_horner3_8.hpp | 248 -
.../boost/math/tools/detail/rational_horner3_9.hpp | 318 -
gatb-core/thirdparty/boost/math/tools/fraction.hpp | 252 -
gatb-core/thirdparty/boost/math/tools/minima.hpp | 152 -
.../thirdparty/boost/math/tools/polynomial.hpp | 323 -
.../thirdparty/boost/math/tools/precision.hpp | 392 -
.../thirdparty/boost/math/tools/promotion.hpp | 175 -
gatb-core/thirdparty/boost/math/tools/rational.hpp | 333 -
.../thirdparty/boost/math/tools/real_cast.hpp | 29 -
gatb-core/thirdparty/boost/math/tools/roots.hpp | 542 -
gatb-core/thirdparty/boost/math/tools/series.hpp | 158 -
gatb-core/thirdparty/boost/math/tools/stats.hpp | 88 -
.../thirdparty/boost/math/tools/toms748_solve.hpp | 609 --
gatb-core/thirdparty/boost/math/tools/traits.hpp | 111 -
gatb-core/thirdparty/boost/math/tools/tuple.hpp | 90 -
gatb-core/thirdparty/boost/math/tools/user.hpp | 105 -
.../thirdparty/boost/math/tools/workaround.hpp | 38 -
gatb-core/thirdparty/boost/math/tr1.hpp | 1115 --
gatb-core/thirdparty/boost/math/tr1_c_macros.ipp | 810 --
gatb-core/thirdparty/boost/math_fwd.hpp | 108 -
gatb-core/thirdparty/boost/move/adl_move_swap.hpp | 233 -
gatb-core/thirdparty/boost/move/algorithm.hpp | 282 -
gatb-core/thirdparty/boost/move/core.hpp | 497 -
gatb-core/thirdparty/boost/move/default_delete.hpp | 195 -
.../thirdparty/boost/move/detail/config_begin.hpp | 19 -
.../thirdparty/boost/move/detail/config_end.hpp | 12 -
.../thirdparty/boost/move/detail/fwd_macros.hpp | 465 -
.../boost/move/detail/iterator_traits.hpp | 87 -
.../thirdparty/boost/move/detail/meta_utils.hpp | 559 -
.../boost/move/detail/meta_utils_core.hpp | 120 -
.../thirdparty/boost/move/detail/move_helpers.hpp | 178 -
.../thirdparty/boost/move/detail/type_traits.hpp | 1078 --
.../boost/move/detail/unique_ptr_meta_utils.hpp | 591 --
.../thirdparty/boost/move/detail/workaround.hpp | 55 -
gatb-core/thirdparty/boost/move/iterator.hpp | 312 -
gatb-core/thirdparty/boost/move/make_unique.hpp | 237 -
gatb-core/thirdparty/boost/move/move.hpp | 35 -
gatb-core/thirdparty/boost/move/traits.hpp | 77 -
gatb-core/thirdparty/boost/move/unique_ptr.hpp | 869 --
gatb-core/thirdparty/boost/move/utility.hpp | 149 -
gatb-core/thirdparty/boost/move/utility_core.hpp | 315 -
gatb-core/thirdparty/boost/mpl/O1_size.hpp | 40 -
gatb-core/thirdparty/boost/mpl/O1_size_fwd.hpp | 24 -
gatb-core/thirdparty/boost/mpl/accumulate.hpp | 39 -
gatb-core/thirdparty/boost/mpl/advance.hpp | 76 -
gatb-core/thirdparty/boost/mpl/advance_fwd.hpp | 28 -
gatb-core/thirdparty/boost/mpl/alias.hpp | 21 -
gatb-core/thirdparty/boost/mpl/always.hpp | 38 -
gatb-core/thirdparty/boost/mpl/and.hpp | 60 -
gatb-core/thirdparty/boost/mpl/apply.hpp | 229 -
gatb-core/thirdparty/boost/mpl/apply_fwd.hpp | 107 -
gatb-core/thirdparty/boost/mpl/apply_wrap.hpp | 234 -
gatb-core/thirdparty/boost/mpl/arg.hpp | 131 -
gatb-core/thirdparty/boost/mpl/arg_fwd.hpp | 28 -
gatb-core/thirdparty/boost/mpl/arithmetic.hpp | 25 -
gatb-core/thirdparty/boost/mpl/as_sequence.hpp | 38 -
gatb-core/thirdparty/boost/mpl/assert.hpp | 439 -
gatb-core/thirdparty/boost/mpl/at.hpp | 52 -
gatb-core/thirdparty/boost/mpl/at_fwd.hpp | 24 -
.../thirdparty/boost/mpl/aux_/O1_size_impl.hpp | 87 -
.../thirdparty/boost/mpl/aux_/adl_barrier.hpp | 48 -
.../thirdparty/boost/mpl/aux_/advance_backward.hpp | 128 -
.../thirdparty/boost/mpl/aux_/advance_forward.hpp | 127 -
gatb-core/thirdparty/boost/mpl/aux_/apply_1st.hpp | 35 -
.../thirdparty/boost/mpl/aux_/arg_typedef.hpp | 31 -
.../thirdparty/boost/mpl/aux_/arithmetic_op.hpp | 92 -
gatb-core/thirdparty/boost/mpl/aux_/arity.hpp | 39 -
gatb-core/thirdparty/boost/mpl/aux_/arity_spec.hpp | 67 -
gatb-core/thirdparty/boost/mpl/aux_/at_impl.hpp | 45 -
gatb-core/thirdparty/boost/mpl/aux_/back_impl.hpp | 43 -
gatb-core/thirdparty/boost/mpl/aux_/basic_bind.hpp | 21 -
.../thirdparty/boost/mpl/aux_/begin_end_impl.hpp | 101 -
gatb-core/thirdparty/boost/mpl/aux_/clear_impl.hpp | 35 -
.../thirdparty/boost/mpl/aux_/common_name_wknd.hpp | 34 -
.../thirdparty/boost/mpl/aux_/comparison_op.hpp | 83 -
gatb-core/thirdparty/boost/mpl/aux_/config/adl.hpp | 40 -
.../thirdparty/boost/mpl/aux_/config/arrays.hpp | 30 -
gatb-core/thirdparty/boost/mpl/aux_/config/bcc.hpp | 28 -
.../thirdparty/boost/mpl/aux_/config/bind.hpp | 33 -
.../thirdparty/boost/mpl/aux_/config/compiler.hpp | 66 -
.../thirdparty/boost/mpl/aux_/config/ctps.hpp | 30 -
.../boost/mpl/aux_/config/dependent_nttp.hpp | 35 -
.../boost/mpl/aux_/config/dmc_ambiguous_ctps.hpp | 27 -
gatb-core/thirdparty/boost/mpl/aux_/config/dtp.hpp | 46 -
gatb-core/thirdparty/boost/mpl/aux_/config/eti.hpp | 47 -
.../boost/mpl/aux_/config/forwarding.hpp | 27 -
gatb-core/thirdparty/boost/mpl/aux_/config/gcc.hpp | 23 -
gatb-core/thirdparty/boost/mpl/aux_/config/gpu.hpp | 35 -
.../thirdparty/boost/mpl/aux_/config/has_apply.hpp | 32 -
.../thirdparty/boost/mpl/aux_/config/has_xxx.hpp | 34 -
.../thirdparty/boost/mpl/aux_/config/integral.hpp | 38 -
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gatb-core/thirdparty/boost/mpl/greater_equal.hpp | 21 -
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gatb-core/thirdparty/boost/mpl/has_xxx.hpp | 647 --
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gatb-core/thirdparty/boost/mpl/is_sequence.hpp | 112 -
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gatb-core/thirdparty/boost/mpl/less.hpp | 21 -
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gatb-core/thirdparty/boost/mpl/negate.hpp | 81 -
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gatb-core/thirdparty/boost/mpl/pair_view.hpp | 169 -
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gatb-core/thirdparty/boost/mpl/placeholders.hpp | 100 -
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gatb-core/thirdparty/boost/mpl/replace_if.hpp | 88 -
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gatb-core/thirdparty/hdf5/src/H5MPtest.c | 237 -
gatb-core/thirdparty/hdf5/src/H5O.c | 3531 -------
gatb-core/thirdparty/hdf5/src/H5Oainfo.c | 533 -
gatb-core/thirdparty/hdf5/src/H5Oalloc.c | 2311 -----
gatb-core/thirdparty/hdf5/src/H5Oattr.c | 876 --
gatb-core/thirdparty/hdf5/src/H5Oattribute.c | 2049 ----
gatb-core/thirdparty/hdf5/src/H5Obogus.c | 217 -
gatb-core/thirdparty/hdf5/src/H5Obtreek.c | 258 -
gatb-core/thirdparty/hdf5/src/H5Ocache.c | 1457 ---
gatb-core/thirdparty/hdf5/src/H5Ochunk.c | 406 -
gatb-core/thirdparty/hdf5/src/H5Ocont.c | 289 -
gatb-core/thirdparty/hdf5/src/H5Ocopy.c | 1970 ----
gatb-core/thirdparty/hdf5/src/H5Odbg.c | 581 --
gatb-core/thirdparty/hdf5/src/H5Odrvinfo.c | 314 -
gatb-core/thirdparty/hdf5/src/H5Odtype.c | 2153 ----
gatb-core/thirdparty/hdf5/src/H5Oefl.c | 591 --
gatb-core/thirdparty/hdf5/src/H5Ofill.c | 1025 --
gatb-core/thirdparty/hdf5/src/H5Oginfo.c | 352 -
gatb-core/thirdparty/hdf5/src/H5Olayout.c | 758 --
gatb-core/thirdparty/hdf5/src/H5Olinfo.c | 587 --
gatb-core/thirdparty/hdf5/src/H5Olink.c | 878 --
gatb-core/thirdparty/hdf5/src/H5Omessage.c | 2438 -----
gatb-core/thirdparty/hdf5/src/H5Omtime.c | 536 -
gatb-core/thirdparty/hdf5/src/H5Oname.c | 308 -
gatb-core/thirdparty/hdf5/src/H5Onull.c | 56 -
gatb-core/thirdparty/hdf5/src/H5Opkg.h | 627 --
gatb-core/thirdparty/hdf5/src/H5Opline.c | 692 --
gatb-core/thirdparty/hdf5/src/H5Oprivate.h | 745 --
gatb-core/thirdparty/hdf5/src/H5Opublic.h | 212 -
gatb-core/thirdparty/hdf5/src/H5Orefcount.c | 325 -
gatb-core/thirdparty/hdf5/src/H5Osdspace.c | 541 -
gatb-core/thirdparty/hdf5/src/H5Oshared.c | 758 --
gatb-core/thirdparty/hdf5/src/H5Oshared.h | 491 -
gatb-core/thirdparty/hdf5/src/H5Oshmesg.c | 248 -
gatb-core/thirdparty/hdf5/src/H5Ostab.c | 444 -
gatb-core/thirdparty/hdf5/src/H5Otest.c | 569 --
gatb-core/thirdparty/hdf5/src/H5Ounknown.c | 89 -
gatb-core/thirdparty/hdf5/src/H5P.c | 1620 ---
gatb-core/thirdparty/hdf5/src/H5PL.c | 746 --
gatb-core/thirdparty/hdf5/src/H5PLextern.h | 46 -
gatb-core/thirdparty/hdf5/src/H5PLprivate.h | 52 -
gatb-core/thirdparty/hdf5/src/H5PLpublic.h | 53 -
gatb-core/thirdparty/hdf5/src/H5Pacpl.c | 88 -
gatb-core/thirdparty/hdf5/src/H5Pdapl.c | 548 -
gatb-core/thirdparty/hdf5/src/H5Pdcpl.c | 1967 ----
gatb-core/thirdparty/hdf5/src/H5Pdeprec.c | 485 -
gatb-core/thirdparty/hdf5/src/H5Pdxpl.c | 1453 ---
gatb-core/thirdparty/hdf5/src/H5Pfapl.c | 2446 -----
gatb-core/thirdparty/hdf5/src/H5Pfcpl.c | 963 --
gatb-core/thirdparty/hdf5/src/H5Pfmpl.c | 127 -
gatb-core/thirdparty/hdf5/src/H5Pgcpl.c | 513 -
gatb-core/thirdparty/hdf5/src/H5Pint.c | 4935 ---------
gatb-core/thirdparty/hdf5/src/H5Plapl.c | 908 --
gatb-core/thirdparty/hdf5/src/H5Plcpl.c | 204 -
gatb-core/thirdparty/hdf5/src/H5Pocpl.c | 1679 ---
gatb-core/thirdparty/hdf5/src/H5Pocpypl.c | 630 --
gatb-core/thirdparty/hdf5/src/H5Ppkg.h | 214 -
gatb-core/thirdparty/hdf5/src/H5Pprivate.h | 165 -
gatb-core/thirdparty/hdf5/src/H5Ppublic.h | 500 -
gatb-core/thirdparty/hdf5/src/H5Pstrcpl.c | 202 -
gatb-core/thirdparty/hdf5/src/H5Ptest.c | 173 -
gatb-core/thirdparty/hdf5/src/H5R.c | 1014 --
gatb-core/thirdparty/hdf5/src/H5RC.c | 127 -
gatb-core/thirdparty/hdf5/src/H5RCprivate.h | 63 -
gatb-core/thirdparty/hdf5/src/H5RS.c | 499 -
gatb-core/thirdparty/hdf5/src/H5RSprivate.h | 61 -
gatb-core/thirdparty/hdf5/src/H5Rdeprec.c | 186 -
gatb-core/thirdparty/hdf5/src/H5Rpkg.h | 64 -
gatb-core/thirdparty/hdf5/src/H5Rprivate.h | 31 -
gatb-core/thirdparty/hdf5/src/H5Rpublic.h | 92 -
gatb-core/thirdparty/hdf5/src/H5S.c | 2182 ----
gatb-core/thirdparty/hdf5/src/H5SL.c | 2558 -----
gatb-core/thirdparty/hdf5/src/H5SLprivate.h | 100 -
gatb-core/thirdparty/hdf5/src/H5SM.c | 2776 -----
gatb-core/thirdparty/hdf5/src/H5SMbtree2.c | 299 -
gatb-core/thirdparty/hdf5/src/H5SMcache.c | 747 --
gatb-core/thirdparty/hdf5/src/H5SMmessage.c | 365 -
gatb-core/thirdparty/hdf5/src/H5SMpkg.h | 292 -
gatb-core/thirdparty/hdf5/src/H5SMprivate.h | 80 -
gatb-core/thirdparty/hdf5/src/H5SMtest.c | 123 -
gatb-core/thirdparty/hdf5/src/H5ST.c | 793 --
gatb-core/thirdparty/hdf5/src/H5STprivate.h | 64 -
gatb-core/thirdparty/hdf5/src/H5Sall.c | 988 --
gatb-core/thirdparty/hdf5/src/H5Sdbg.c | 125 -
gatb-core/thirdparty/hdf5/src/H5Shyper.c | 8858 ----------------
gatb-core/thirdparty/hdf5/src/H5Smpio.c | 1094 --
gatb-core/thirdparty/hdf5/src/H5Snone.c | 920 --
gatb-core/thirdparty/hdf5/src/H5Spkg.h | 260 -
gatb-core/thirdparty/hdf5/src/H5Spoint.c | 1717 ----
gatb-core/thirdparty/hdf5/src/H5Sprivate.h | 305 -
gatb-core/thirdparty/hdf5/src/H5Spublic.h | 152 -
gatb-core/thirdparty/hdf5/src/H5Sselect.c | 2066 ----
gatb-core/thirdparty/hdf5/src/H5Stest.c | 111 -
gatb-core/thirdparty/hdf5/src/H5T.c | 5525 ----------
gatb-core/thirdparty/hdf5/src/H5TS.c | 520 -
gatb-core/thirdparty/hdf5/src/H5TSprivate.h | 131 -
gatb-core/thirdparty/hdf5/src/H5Tarray.c | 454 -
gatb-core/thirdparty/hdf5/src/H5Tbit.c | 717 --
gatb-core/thirdparty/hdf5/src/H5Tcommit.c | 888 --
gatb-core/thirdparty/hdf5/src/H5Tcompound.c | 671 --
gatb-core/thirdparty/hdf5/src/H5Tconv.c | 9865 ------------------
gatb-core/thirdparty/hdf5/src/H5Tcset.c | 151 -
gatb-core/thirdparty/hdf5/src/H5Tdbg.c | 402 -
gatb-core/thirdparty/hdf5/src/H5Tdeprec.c | 255 -
gatb-core/thirdparty/hdf5/src/H5Tenum.c | 608 --
gatb-core/thirdparty/hdf5/src/H5Tfields.c | 513 -
gatb-core/thirdparty/hdf5/src/H5Tfixed.c | 180 -
gatb-core/thirdparty/hdf5/src/H5Tfloat.c | 422 -
gatb-core/thirdparty/hdf5/src/H5Tnative.c | 937 --
gatb-core/thirdparty/hdf5/src/H5Toffset.c | 300 -
gatb-core/thirdparty/hdf5/src/H5Toh.c | 235 -
gatb-core/thirdparty/hdf5/src/H5Topaque.c | 141 -
gatb-core/thirdparty/hdf5/src/H5Torder.c | 309 -
gatb-core/thirdparty/hdf5/src/H5Tpad.c | 147 -
gatb-core/thirdparty/hdf5/src/H5Tpkg.h | 1325 ---
gatb-core/thirdparty/hdf5/src/H5Tprecis.c | 302 -
gatb-core/thirdparty/hdf5/src/H5Tprivate.h | 165 -
gatb-core/thirdparty/hdf5/src/H5Tpublic.h | 621 --
gatb-core/thirdparty/hdf5/src/H5Tstrpad.c | 163 -
gatb-core/thirdparty/hdf5/src/H5Tvisit.c | 155 -
gatb-core/thirdparty/hdf5/src/H5Tvlen.c | 1279 ---
gatb-core/thirdparty/hdf5/src/H5VM.c | 1712 ----
gatb-core/thirdparty/hdf5/src/H5VMprivate.h | 492 -
gatb-core/thirdparty/hdf5/src/H5WB.c | 291 -
gatb-core/thirdparty/hdf5/src/H5WBprivate.h | 64 -
gatb-core/thirdparty/hdf5/src/H5Z.c | 1715 ----
gatb-core/thirdparty/hdf5/src/H5Zdeflate.c | 208 -
gatb-core/thirdparty/hdf5/src/H5Zfletcher32.c | 167 -
gatb-core/thirdparty/hdf5/src/H5Znbit.c | 1474 ---
gatb-core/thirdparty/hdf5/src/H5Zpkg.h | 57 -
gatb-core/thirdparty/hdf5/src/H5Zprivate.h | 111 -
gatb-core/thirdparty/hdf5/src/H5Zpublic.h | 250 -
gatb-core/thirdparty/hdf5/src/H5Zscaleoffset.c | 1723 ----
gatb-core/thirdparty/hdf5/src/H5Zshuffle.c | 292 -
gatb-core/thirdparty/hdf5/src/H5Zszip.c | 373 -
gatb-core/thirdparty/hdf5/src/H5Ztrans.c | 1718 ----
gatb-core/thirdparty/hdf5/src/H5api_adpt.h | 278 -
gatb-core/thirdparty/hdf5/src/H5checksum.c | 496 -
gatb-core/thirdparty/hdf5/src/H5config.h.in | 556 -
gatb-core/thirdparty/hdf5/src/H5dbg.c | 146 -
gatb-core/thirdparty/hdf5/src/H5detect.c | 1790 ----
gatb-core/thirdparty/hdf5/src/H5err.txt | 261 -
gatb-core/thirdparty/hdf5/src/H5make_libsettings.c | 298 -
gatb-core/thirdparty/hdf5/src/H5overflow.h | 1939 ----
gatb-core/thirdparty/hdf5/src/H5overflow.txt | 45 -
gatb-core/thirdparty/hdf5/src/H5private.h | 2122 ----
gatb-core/thirdparty/hdf5/src/H5public.h | 344 -
gatb-core/thirdparty/hdf5/src/H5system.c | 919 --
gatb-core/thirdparty/hdf5/src/H5timer.c | 273 -
gatb-core/thirdparty/hdf5/src/H5trace.c | 2538 -----
gatb-core/thirdparty/hdf5/src/H5vers.txt | 75 -
gatb-core/thirdparty/hdf5/src/H5version.h | 419 -
gatb-core/thirdparty/hdf5/src/H5win32defs.h | 112 -
gatb-core/thirdparty/hdf5/src/hdf5.h | 56 -
gatb-core/thirdparty/hdf5/src/libhdf5.settings.in | 72 -
gatb-core/thirdparty/hdf5/tools/CMakeLists.txt | 55 -
gatb-core/thirdparty/hdf5/tools/COPYING | 16 -
.../thirdparty/hdf5/tools/h5dump/CMakeLists.txt | 80 -
gatb-core/thirdparty/hdf5/tools/h5dump/binread.c | 97 -
gatb-core/thirdparty/hdf5/tools/h5dump/h5dump.c | 1788 ----
gatb-core/thirdparty/hdf5/tools/h5dump/h5dump.h | 113 -
.../thirdparty/hdf5/tools/h5dump/h5dump_ddl.c | 2128 ----
.../thirdparty/hdf5/tools/h5dump/h5dump_ddl.h | 52 -
.../thirdparty/hdf5/tools/h5dump/h5dump_defines.h | 56 -
.../thirdparty/hdf5/tools/h5dump/h5dump_extern.h | 113 -
.../thirdparty/hdf5/tools/h5dump/h5dump_xml.c | 4582 ---------
.../thirdparty/hdf5/tools/h5dump/h5dump_xml.h | 39 -
.../thirdparty/hdf5/tools/h5dump/h5dumpgentest.c | 10232 -------------------
.../thirdparty/hdf5/tools/h5dump/testh5dump.sh.in | 1342 ---
.../hdf5/tools/h5dump/testh5dumppbits.sh.in | 598 --
.../hdf5/tools/h5dump/testh5dumpxml.sh.in | 388 -
.../thirdparty/hdf5/tools/h5ls/CMakeLists.txt | 47 -
.../thirdparty/hdf5/tools/h5ls/CMakeTests.cmake | 395 -
gatb-core/thirdparty/hdf5/tools/h5ls/h5ls.c | 2914 ------
.../thirdparty/hdf5/tools/h5ls/testh5ls.sh.in | 430 -
gatb-core/thirdparty/hdf5/tools/lib/CMakeLists.txt | 105 -
gatb-core/thirdparty/hdf5/tools/lib/h5diff.c | 1941 ----
gatb-core/thirdparty/hdf5/tools/lib/h5diff.h | 200 -
gatb-core/thirdparty/hdf5/tools/lib/h5diff_array.c | 6339 ------------
gatb-core/thirdparty/hdf5/tools/lib/h5diff_attr.c | 599 --
gatb-core/thirdparty/hdf5/tools/lib/h5diff_dset.c | 953 --
gatb-core/thirdparty/hdf5/tools/lib/h5diff_util.c | 397 -
gatb-core/thirdparty/hdf5/tools/lib/h5tools.c | 1856 ----
gatb-core/thirdparty/hdf5/tools/lib/h5tools.h | 605 --
gatb-core/thirdparty/hdf5/tools/lib/h5tools_dump.c | 3953 -------
gatb-core/thirdparty/hdf5/tools/lib/h5tools_dump.h | 84 -
.../thirdparty/hdf5/tools/lib/h5tools_error.h | 124 -
.../thirdparty/hdf5/tools/lib/h5tools_filters.c | 210 -
gatb-core/thirdparty/hdf5/tools/lib/h5tools_ref.c | 330 -
gatb-core/thirdparty/hdf5/tools/lib/h5tools_ref.h | 38 -
gatb-core/thirdparty/hdf5/tools/lib/h5tools_str.c | 1420 ---
gatb-core/thirdparty/hdf5/tools/lib/h5tools_str.h | 53 -
gatb-core/thirdparty/hdf5/tools/lib/h5tools_type.c | 203 -
.../thirdparty/hdf5/tools/lib/h5tools_utils.c | 934 --
.../thirdparty/hdf5/tools/lib/h5tools_utils.h | 183 -
gatb-core/thirdparty/hdf5/tools/lib/h5trav.c | 1260 ---
gatb-core/thirdparty/hdf5/tools/lib/h5trav.h | 199 -
gatb-core/thirdparty/hdf5/tools/lib/io_timer.c | 232 -
gatb-core/thirdparty/hdf5/tools/lib/io_timer.h | 83 -
gatb-core/thirdparty/hdf5/tools/lib/ph5diff.h | 52 -
gatb-core/thirdparty/json/json.hpp | 659 --
gatb-core/tools/CMakeLists.txt | 4 +-
gatb-core/tools/leon.cpp | 61 -
2685 files changed, 1934 insertions(+), 723771 deletions(-)
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