[med-svn] [r-bioc-reactome.db] 01/03: Injecting r-bioc-reactome.db to address bug #735547 (not sure whether we really want such a large data package - for a first test here is the packagaging)
Andreas Tille
tille at debian.org
Fri Nov 17 13:38:55 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository r-bioc-reactome.db.
commit 9f330b6d36b15d183b336ecfeab176cf20bf062b
Author: Andreas Tille <tille at debian.org>
Date: Thu Jan 16 14:07:38 2014 +0000
Injecting r-bioc-reactome.db to address bug #735547 (not sure whether we really want such a large data package - for a first test here is the packagaging)
---
debian/README.test | 5 +
debian/changelog | 5 +
debian/compat | 1 +
debian/control | 27 +++++
debian/copyright | 301 +++++++++++++++++++++++++++++++++++++++++++++++++++
debian/rules | 4 +
debian/source/format | 1 +
debian/watch | 3 +
8 files changed, 347 insertions(+)
diff --git a/debian/README.test b/debian/README.test
new file mode 100644
index 0000000..0fce27d
--- /dev/null
+++ b/debian/README.test
@@ -0,0 +1,5 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by loading it into R with the command
+‘library(reactome.db)’ in order to confirm its integrity.
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..fef737f
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+r-bioc-reactome.db (1.46.1-1) UNRELEASED; urgency=low
+
+ * Initial release (closes: #???)
+
+ -- Andreas Tille <tille at debian.org> Thu, 16 Jan 2014 14:13:14 +0100
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..38c7458
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,27 @@
+Source: r-bioc-reactome.db
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ cdbs,
+ r-base-dev,
+ r-bioc-annotationdbi
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-reactome.db/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-reactome.db/trunk/
+Homepage: http://www.bioconductor.org/packages/release/data/annotation/html/reactome.db.html
+
+Package: r-bioc-reactome.db
+Architecture: all
+Depends: ${R:Depends},
+ ${misc:Depends},
+ AnnotationDbi
+Description: set of annotation maps for reactome
+ This package is part of BioConductor and provides a set of annotation
+ maps for reactome assembled using data from reactome.
+ .
+ Reactome is a free online database of biological pathways. There are
+ several Reactomes that concentrate on specific organisms, the largest of
+ these is focused on human biology, the following description
+ concentrates on the human Reactome.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..90f68a0
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,301 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: reactome.db
+Upstream-Contact: Willem Ligtenberg <willem.ligtenberg at openanalytics.eu>
+Source: http://www.bioconductor.org/packages/release/data/annotation/html/reactome.db.html
+
+Files: *
+Copyright: © 2006-2013 Willem Ligtenberg <willem.ligtenberg at openanalytics.eu>
+License: CC-BY-3.0
+
+Files: debian/*
+Copyright: 2013 Andreas Tille <tille at debian.org>
+License: CC-BY-3.0
+
+License: CC-BY-3.0
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diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..aeb12b3
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,4 @@
+#!/usr/bin/make -f
+
+debRreposname=bioc
+include /usr/share/R/debian/r-cran.mk
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..af23777
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+opts=downloadurlmangle=s/\.\./packages\/release\/data\/annotation/ \
+ http://www.bioconductor.org/packages/release/data/annotation/html/reactome.db.html .*/reactome\.db_([\d\.]+)\.tar\.gz
--
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