[med-svn] [populations] 06/13: Import Upstream version 1.2.33+svn0120106
Andreas Tille
tille at debian.org
Sat Nov 18 21:01:24 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository populations.
commit 23258a12e45552d37ed8a8919a83d3685bbeb325
Author: Andreas Tille <tille at debian.org>
Date: Fri Nov 17 21:46:13 2017 +0100
Import Upstream version 1.2.33+svn0120106
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+ arbreplus.cpp arbre.cpp couleur.cpp fstat.cpp jeupop.cpp allele.cpp individu.cpp \
+ strucpop.cpp metapop.cpp locus.cpp population.cpp chaineficpop.cpp applpop.cpp \
+ jeupopexp.cpp distgnt.cpp matrices.cpp vecteurs.cpp
+
+# set the include path found by configure
+INCLUDES= $(all_includes)
+
+# the library search path.
+populations_LDFLAGS = $(all_libraries)
+noinst_HEADERS = applpopulations.h internat.h matrices.h vecteurs.h arbreplus.h \
+ arbre.h couleur.h fstat.h jeupop.h allele.h individu.h strucpop.h metapop.h \
+ metapop.h locus.h population.h chaineficpop.h applpop.h jeupopexp.h distgnt.h \
+ applications.h
diff --git a/src/Makefile.dos b/src/Makefile.dos
new file mode 100644
index 0000000..6c83339
--- /dev/null
+++ b/src/Makefile.dos
@@ -0,0 +1,36 @@
+#SHELL = /bin/sh
+
+VERSIONNUMBER = 1.2.01
+RELEASENUMBER = 1
+
+#UNIX = `wx-config --libs` `wx-config --cflags`
+
+#CC = g++ -DCOMPILATION_MINGW32 -DHAVE_CONFIG_H -I. -I.. -O2 -g3
+CC = i586-mingw32msvc-g++ -DCOMPILATION_MINGW32 -I. -I.. -O2 -g3
+#CC = i586-mingw32msvc-g++ -DCOMPILATION_MINGW32 -I. -I.. -O2 -g3 -lexpat
+#i586-mingw32msvc-strip populations.exe
+
+#g++ -DCOMPILATION_MINGW32 -I. -I.. -O2 -g3
+
+all: populations.cpp
+ $(CC) allele.cpp -c
+ $(CC) applications.cpp -c
+ $(CC) applpop.cpp -c
+ $(CC) applpopulations.cpp -c
+ $(CC) arbre.cpp -c
+ $(CC) arbreplus.cpp -c
+ $(CC) chaineficpop.cpp -c
+ $(CC) couleur.cpp -c
+ $(CC) distgnt.cpp -c
+ $(CC) fstat.cpp -c
+ $(CC) individu.cpp -c
+ $(CC) jeupop.cpp -c
+ $(CC) jeupopexp.cpp -c
+ $(CC) locus.cpp -c
+ $(CC) populations.cpp -c
+ $(CC) matrices.cpp -c
+ $(CC) metapop.cpp -c
+ $(CC) population.cpp -c
+ $(CC) strucpop.cpp -c
+ $(CC) vecteurs.cpp -c
+ $(CC) allele.o applications.o applpop.o applpopulations.o arbre.o arbreplus.o chaineficpop.o couleur.o distgnt.o fstat.o individu.o jeupop.o jeupopexp.o locus.o populations.o matrices.o metapop.o population.o strucpop.o vecteurs.o -o populations.exe
diff --git a/src/Makefile.in b/src/Makefile.in
new file mode 100644
index 0000000..3016d33
--- /dev/null
+++ b/src/Makefile.in
@@ -0,0 +1,406 @@
+# Makefile.in generated automatically by automake 1.4-p6 from Makefile.am
+
+# Copyright (C) 1994, 1995-8, 1999, 2001 Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+SHELL = @SHELL@
+
+srcdir = @srcdir@
+top_srcdir = @top_srcdir@
+VPATH = @srcdir@
+prefix = @prefix@
+exec_prefix = @exec_prefix@
+
+bindir = @bindir@
+sbindir = @sbindir@
+libexecdir = @libexecdir@
+datadir = @datadir@
+sysconfdir = @sysconfdir@
+sharedstatedir = @sharedstatedir@
+localstatedir = @localstatedir@
+libdir = @libdir@
+infodir = @infodir@
+mandir = @mandir@
+includedir = @includedir@
+oldincludedir = /usr/include
+
+DESTDIR =
+
+pkgdatadir = $(datadir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+
+top_builddir = ..
+
+ACLOCAL = @ACLOCAL@
+AUTOCONF = @AUTOCONF@
+AUTOMAKE = @AUTOMAKE@
+AUTOHEADER = @AUTOHEADER@
+
+INSTALL = @INSTALL@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@ $(AM_INSTALL_PROGRAM_FLAGS)
+INSTALL_DATA = @INSTALL_DATA@
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+transform = @program_transform_name@
+
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+host_alias = @host_alias@
+host_triplet = @host@
+AR = @AR@
+AS = @AS@
+CC = @CC@
+CXX = @CXX@
+CXXCPP = @CXXCPP@
+DLLTOOL = @DLLTOOL@
+ECHO = @ECHO@
+EGREP = @EGREP@
+EXEEXT = @EXEEXT@
+F77 = @F77@
+GCJ = @GCJ@
+GCJFLAGS = @GCJFLAGS@
+HAVE_LIB = @HAVE_LIB@
+LIB = @LIB@
+LIBTOOL = @LIBTOOL@
+LN_S = @LN_S@
+LTLIB = @LTLIB@
+MAKEINFO = @MAKEINFO@
+OBJDUMP = @OBJDUMP@
+OBJEXT = @OBJEXT@
+PACKAGE = @PACKAGE@
+RANLIB = @RANLIB@
+RC = @RC@
+STRIP = @STRIP@
+VERSION = @VERSION@
+
+bin_PROGRAMS = populations
+populations_SOURCES = populations.cpp applications.cpp applpopulations.cpp arbreplus.cpp arbre.cpp couleur.cpp fstat.cpp jeupop.cpp allele.cpp individu.cpp strucpop.cpp metapop.cpp locus.cpp population.cpp chaineficpop.cpp applpop.cpp jeupopexp.cpp distgnt.cpp matrices.cpp vecteurs.cpp
+
+
+# set the include path found by configure
+INCLUDES = $(all_includes)
+
+# the library search path.
+populations_LDFLAGS = $(all_libraries)
+noinst_HEADERS = applpopulations.h internat.h matrices.h vecteurs.h arbreplus.h arbre.h couleur.h fstat.h jeupop.h allele.h individu.h strucpop.h metapop.h metapop.h locus.h population.h chaineficpop.h applpop.h jeupopexp.h distgnt.h applications.h
+
+mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
+CONFIG_HEADER = ../config.h
+CONFIG_CLEAN_FILES =
+bin_PROGRAMS = populations$(EXEEXT)
+PROGRAMS = $(bin_PROGRAMS)
+
+
+DEFS = @DEFS@ -I. -I$(srcdir) -I..
+CPPFLAGS = @CPPFLAGS@
+LDFLAGS = @LDFLAGS@
+LIBS = @LIBS@
+populations_OBJECTS = populations.$(OBJEXT) applications.$(OBJEXT) \
+applpopulations.$(OBJEXT) arbreplus.$(OBJEXT) arbre.$(OBJEXT) \
+couleur.$(OBJEXT) fstat.$(OBJEXT) jeupop.$(OBJEXT) allele.$(OBJEXT) \
+individu.$(OBJEXT) strucpop.$(OBJEXT) metapop.$(OBJEXT) locus.$(OBJEXT) \
+population.$(OBJEXT) chaineficpop.$(OBJEXT) applpop.$(OBJEXT) \
+jeupopexp.$(OBJEXT) distgnt.$(OBJEXT) matrices.$(OBJEXT) \
+vecteurs.$(OBJEXT)
+populations_LDADD = $(LDADD)
+populations_DEPENDENCIES =
+CXXFLAGS = @CXXFLAGS@
+CXXCOMPILE = $(CXX) $(DEFS) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS)
+LTCXXCOMPILE = $(LIBTOOL) --mode=compile $(CXX) $(DEFS) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS)
+CXXLD = $(CXX)
+CXXLINK = $(LIBTOOL) --mode=link $(CXXLD) $(AM_CXXFLAGS) $(CXXFLAGS) $(LDFLAGS) -o $@
+HEADERS = $(noinst_HEADERS)
+
+DIST_COMMON = Makefile.am Makefile.in
+
+
+DISTFILES = $(DIST_COMMON) $(SOURCES) $(HEADERS) $(TEXINFOS) $(EXTRA_DIST)
+
+TAR = tar
+GZIP_ENV = --best
+DEP_FILES = .deps/allele.P .deps/applications.P .deps/applpop.P \
+.deps/applpopulations.P .deps/arbre.P .deps/arbreplus.P \
+.deps/chaineficpop.P .deps/couleur.P .deps/distgnt.P .deps/fstat.P \
+.deps/individu.P .deps/jeupop.P .deps/jeupopexp.P .deps/locus.P \
+.deps/matrices.P .deps/metapop.P .deps/population.P .deps/populations.P \
+.deps/strucpop.P .deps/vecteurs.P
+SOURCES = $(populations_SOURCES)
+OBJECTS = $(populations_OBJECTS)
+
+all: all-redirect
+.SUFFIXES:
+.SUFFIXES: .S .c .cpp .lo .o .obj .s
+$(srcdir)/Makefile.in: Makefile.am $(top_srcdir)/configure.in $(ACLOCAL_M4)
+ cd $(top_srcdir) && $(AUTOMAKE) --gnu src/Makefile
+
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status $(BUILT_SOURCES)
+ cd $(top_builddir) \
+ && CONFIG_FILES=$(subdir)/$@ CONFIG_HEADERS= $(SHELL) ./config.status
+
+
+mostlyclean-binPROGRAMS:
+
+clean-binPROGRAMS:
+ -test -z "$(bin_PROGRAMS)" || rm -f $(bin_PROGRAMS)
+
+distclean-binPROGRAMS:
+
+maintainer-clean-binPROGRAMS:
+
+install-binPROGRAMS: $(bin_PROGRAMS)
+ @$(NORMAL_INSTALL)
+ $(mkinstalldirs) $(DESTDIR)$(bindir)
+ @list='$(bin_PROGRAMS)'; for p in $$list; do \
+ if test -f $$p; then \
+ echo " $(LIBTOOL) --mode=install $(INSTALL_PROGRAM) $$p $(DESTDIR)$(bindir)/`echo $$p|sed 's/$(EXEEXT)$$//'|sed '$(transform)'|sed 's/$$/$(EXEEXT)/'`"; \
+ $(LIBTOOL) --mode=install $(INSTALL_PROGRAM) $$p $(DESTDIR)$(bindir)/`echo $$p|sed 's/$(EXEEXT)$$//'|sed '$(transform)'|sed 's/$$/$(EXEEXT)/'`; \
+ else :; fi; \
+ done
+
+uninstall-binPROGRAMS:
+ @$(NORMAL_UNINSTALL)
+ list='$(bin_PROGRAMS)'; for p in $$list; do \
+ rm -f $(DESTDIR)$(bindir)/`echo $$p|sed 's/$(EXEEXT)$$//'|sed '$(transform)'|sed 's/$$/$(EXEEXT)/'`; \
+ done
+
+# FIXME: We should only use cygpath when building on Windows,
+# and only if it is available.
+.c.obj:
+ $(COMPILE) -c `cygpath -w $<`
+
+.s.o:
+ $(COMPILE) -c $<
+
+.S.o:
+ $(COMPILE) -c $<
+
+mostlyclean-compile:
+ -rm -f *.o core *.core
+ -rm -f *.$(OBJEXT)
+
+clean-compile:
+
+distclean-compile:
+ -rm -f *.tab.c
+
+maintainer-clean-compile:
+
+.s.lo:
+ $(LIBTOOL) --mode=compile $(COMPILE) -c $<
+
+.S.lo:
+ $(LIBTOOL) --mode=compile $(COMPILE) -c $<
+
+mostlyclean-libtool:
+ -rm -f *.lo
+
+clean-libtool:
+ -rm -rf .libs _libs
+
+distclean-libtool:
+
+maintainer-clean-libtool:
+
+populations$(EXEEXT): $(populations_OBJECTS) $(populations_DEPENDENCIES)
+ @rm -f populations$(EXEEXT)
+ $(CXXLINK) $(populations_LDFLAGS) $(populations_OBJECTS) $(populations_LDADD) $(LIBS)
+.cpp.o:
+ $(CXXCOMPILE) -c $<
+.cpp.obj:
+ $(CXXCOMPILE) -c `cygpath -w $<`
+.cpp.lo:
+ $(LTCXXCOMPILE) -c $<
+
+tags: TAGS
+
+ID: $(HEADERS) $(SOURCES) $(LISP)
+ list='$(SOURCES) $(HEADERS)'; \
+ unique=`for i in $$list; do echo $$i; done | \
+ awk ' { files[$$0] = 1; } \
+ END { for (i in files) print i; }'`; \
+ here=`pwd` && cd $(srcdir) \
+ && mkid -f$$here/ID $$unique $(LISP)
+
+TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) $(LISP)
+ tags=; \
+ here=`pwd`; \
+ list='$(SOURCES) $(HEADERS)'; \
+ unique=`for i in $$list; do echo $$i; done | \
+ awk ' { files[$$0] = 1; } \
+ END { for (i in files) print i; }'`; \
+ test -z "$(ETAGS_ARGS)$$unique$(LISP)$$tags" \
+ || (cd $(srcdir) && etags -o $$here/TAGS $(ETAGS_ARGS) $$tags $$unique $(LISP))
+
+mostlyclean-tags:
+
+clean-tags:
+
+distclean-tags:
+ -rm -f TAGS ID
+
+maintainer-clean-tags:
+
+distdir = $(top_builddir)/$(PACKAGE)-$(VERSION)/$(subdir)
+
+subdir = src
+
+distdir: $(DISTFILES)
+ here=`cd $(top_builddir) && pwd`; \
+ top_distdir=`cd $(top_distdir) && pwd`; \
+ distdir=`cd $(distdir) && pwd`; \
+ cd $(top_srcdir) \
+ && $(AUTOMAKE) --include-deps --build-dir=$$here --srcdir-name=$(top_srcdir) --output-dir=$$top_distdir --gnu src/Makefile
+ @for file in $(DISTFILES); do \
+ d=$(srcdir); \
+ if test -d $$d/$$file; then \
+ cp -pr $$d/$$file $(distdir)/$$file; \
+ else \
+ test -f $(distdir)/$$file \
+ || ln $$d/$$file $(distdir)/$$file 2> /dev/null \
+ || cp -p $$d/$$file $(distdir)/$$file || :; \
+ fi; \
+ done
+
+DEPS_MAGIC := $(shell mkdir .deps > /dev/null 2>&1 || :)
+
+-include $(DEP_FILES)
+
+mostlyclean-depend:
+
+clean-depend:
+
+distclean-depend:
+ -rm -rf .deps
+
+maintainer-clean-depend:
+
+%.o: %.c
+ @echo '$(COMPILE) -c $<'; \
+ $(COMPILE) -Wp,-MD,.deps/$(*F).pp -c $<
+ @-cp .deps/$(*F).pp .deps/$(*F).P; \
+ tr ' ' '\012' < .deps/$(*F).pp \
+ | sed -e 's/^\\$$//' -e '/^$$/ d' -e '/:$$/ d' -e 's/$$/ :/' \
+ >> .deps/$(*F).P; \
+ rm .deps/$(*F).pp
+
+%.lo: %.c
+ @echo '$(LTCOMPILE) -c $<'; \
+ $(LTCOMPILE) -Wp,-MD,.deps/$(*F).pp -c $<
+ @-sed -e 's/^\([^:]*\)\.o[ ]*:/\1.lo \1.o :/' \
+ < .deps/$(*F).pp > .deps/$(*F).P; \
+ tr ' ' '\012' < .deps/$(*F).pp \
+ | sed -e 's/^\\$$//' -e '/^$$/ d' -e '/:$$/ d' -e 's/$$/ :/' \
+ >> .deps/$(*F).P; \
+ rm -f .deps/$(*F).pp
+
+%.o: %.cpp
+ @echo '$(CXXCOMPILE) -c $<'; \
+ $(CXXCOMPILE) -Wp,-MD,.deps/$(*F).pp -c $<
+ @-cp .deps/$(*F).pp .deps/$(*F).P; \
+ tr ' ' '\012' < .deps/$(*F).pp \
+ | sed -e 's/^\\$$//' -e '/^$$/ d' -e '/:$$/ d' -e 's/$$/ :/' \
+ >> .deps/$(*F).P; \
+ rm .deps/$(*F).pp
+
+%.lo: %.cpp
+ @echo '$(LTCXXCOMPILE) -c $<'; \
+ $(LTCXXCOMPILE) -Wp,-MD,.deps/$(*F).pp -c $<
+ @-sed -e 's/^\([^:]*\)\.o[ ]*:/\1.lo \1.o :/' \
+ < .deps/$(*F).pp > .deps/$(*F).P; \
+ tr ' ' '\012' < .deps/$(*F).pp \
+ | sed -e 's/^\\$$//' -e '/^$$/ d' -e '/:$$/ d' -e 's/$$/ :/' \
+ >> .deps/$(*F).P; \
+ rm -f .deps/$(*F).pp
+info-am:
+info: info-am
+dvi-am:
+dvi: dvi-am
+check-am: all-am
+check: check-am
+installcheck-am:
+installcheck: installcheck-am
+install-exec-am: install-binPROGRAMS
+install-exec: install-exec-am
+
+install-data-am:
+install-data: install-data-am
+
+install-am: all-am
+ @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+install: install-am
+uninstall-am: uninstall-binPROGRAMS
+uninstall: uninstall-am
+all-am: Makefile $(PROGRAMS) $(HEADERS)
+all-redirect: all-am
+install-strip:
+ $(MAKE) $(AM_MAKEFLAGS) AM_INSTALL_PROGRAM_FLAGS=-s install
+installdirs:
+ $(mkinstalldirs) $(DESTDIR)$(bindir)
+
+
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+ -rm -f Makefile $(CONFIG_CLEAN_FILES)
+ -rm -f config.cache config.log stamp-h stamp-h[0-9]*
+
+maintainer-clean-generic:
+mostlyclean-am: mostlyclean-binPROGRAMS mostlyclean-compile \
+ mostlyclean-libtool mostlyclean-tags mostlyclean-depend \
+ mostlyclean-generic
+
+mostlyclean: mostlyclean-am
+
+clean-am: clean-binPROGRAMS clean-compile clean-libtool clean-tags \
+ clean-depend clean-generic mostlyclean-am
+
+clean: clean-am
+
+distclean-am: distclean-binPROGRAMS distclean-compile distclean-libtool \
+ distclean-tags distclean-depend distclean-generic \
+ clean-am
+ -rm -f libtool
+
+distclean: distclean-am
+
+maintainer-clean-am: maintainer-clean-binPROGRAMS \
+ maintainer-clean-compile maintainer-clean-libtool \
+ maintainer-clean-tags maintainer-clean-depend \
+ maintainer-clean-generic distclean-am
+ @echo "This command is intended for maintainers to use;"
+ @echo "it deletes files that may require special tools to rebuild."
+
+maintainer-clean: maintainer-clean-am
+
+.PHONY: mostlyclean-binPROGRAMS distclean-binPROGRAMS clean-binPROGRAMS \
+maintainer-clean-binPROGRAMS uninstall-binPROGRAMS install-binPROGRAMS \
+mostlyclean-compile distclean-compile clean-compile \
+maintainer-clean-compile mostlyclean-libtool distclean-libtool \
+clean-libtool maintainer-clean-libtool tags mostlyclean-tags \
+distclean-tags clean-tags maintainer-clean-tags distdir \
+mostlyclean-depend distclean-depend clean-depend \
+maintainer-clean-depend info-am info dvi-am dvi check check-am \
+installcheck-am installcheck install-exec-am install-exec \
+install-data-am install-data install-am install uninstall-am uninstall \
+all-redirect all-am all installdirs mostlyclean-generic \
+distclean-generic clean-generic maintainer-clean-generic clean \
+mostlyclean distclean maintainer-clean
+
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/src/cmake_install.cmake b/src/cmake_install.cmake
new file mode 100644
index 0000000..8fce684
--- /dev/null
+++ b/src/cmake_install.cmake
@@ -0,0 +1,34 @@
+# Install script for directory: /home/georgesk/developpement/populations/populations-1.2.33+svn0120106/src
+
+# Set the install prefix
+IF(NOT DEFINED CMAKE_INSTALL_PREFIX)
+ SET(CMAKE_INSTALL_PREFIX "/usr")
+ENDIF(NOT DEFINED CMAKE_INSTALL_PREFIX)
+STRING(REGEX REPLACE "/$" "" CMAKE_INSTALL_PREFIX "${CMAKE_INSTALL_PREFIX}")
+
+# Set the install configuration name.
+IF(NOT DEFINED CMAKE_INSTALL_CONFIG_NAME)
+ IF(BUILD_TYPE)
+ STRING(REGEX REPLACE "^[^A-Za-z0-9_]+" ""
+ CMAKE_INSTALL_CONFIG_NAME "${BUILD_TYPE}")
+ ELSE(BUILD_TYPE)
+ SET(CMAKE_INSTALL_CONFIG_NAME "Release")
+ ENDIF(BUILD_TYPE)
+ MESSAGE(STATUS "Install configuration: \"${CMAKE_INSTALL_CONFIG_NAME}\"")
+ENDIF(NOT DEFINED CMAKE_INSTALL_CONFIG_NAME)
+
+# Set the component getting installed.
+IF(NOT CMAKE_INSTALL_COMPONENT)
+ IF(COMPONENT)
+ MESSAGE(STATUS "Install component: \"${COMPONENT}\"")
+ SET(CMAKE_INSTALL_COMPONENT "${COMPONENT}")
+ ELSE(COMPONENT)
+ SET(CMAKE_INSTALL_COMPONENT)
+ ENDIF(COMPONENT)
+ENDIF(NOT CMAKE_INSTALL_COMPONENT)
+
+# Install shared libraries without execute permission?
+IF(NOT DEFINED CMAKE_INSTALL_SO_NO_EXE)
+ SET(CMAKE_INSTALL_SO_NO_EXE "1")
+ENDIF(NOT DEFINED CMAKE_INSTALL_SO_NO_EXE)
+
diff --git a/src/populations b/src/populations
index da2aace..d36bb1c 100755
Binary files a/src/populations and b/src/populations differ
diff --git a/test.svg b/test.svg
deleted file mode 100644
index 5509d46..0000000
--- a/test.svg
+++ /dev/null
@@ -1,220 +0,0 @@
-<?xml version="1.0" encoding="ISO-8859-1" standalone="no"?>
-<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
-<svg version="1.1" baseProfile="full" id="body" width="8in" height="8in" viewBox="0 0 1 1" preserveAspectRatio="none" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:ev="http://www.w3.org/2001/xml-events">
-<title>SVG drawing</title>
-<desc>This was produced by version 4.2 of GNU libplot, a free library for exporting 2-D vector graphics.</desc>
-<rect id="background" x="0" y="0" width="1" height="1" stroke="none" fill="white"/>
-<g id="content" transform="translate(0,1) scale(1,-1) scale(0.00033333) " xml:space="preserve" stroke="black" stroke-linecap="butt" stroke-linejoin="miter" stroke-miterlimit="10.433" stroke-dasharray="none" stroke-dashoffset="0" stroke-opacity="1" fill="none" fill-rule="even-odd" fill-opacity="1" font-style="normal" font-variant="normal" font-weight="normal" font-stretch="normal" font-size-adjust="none" letter-spacing="normal" word-spacing="normal" text-anchor="start">
-<line x1="1448" y1="1012" x2="670" y2="1012" stroke-width="0.25" />
-<line x1="670" y1="1012" x2="670" y2="980" stroke-width="0.25" />
-<text transform="translate(1448,990.82) scale(1,-1) scale(3) " font-family="Helvetica,sans-serif" font-size="20px" stroke="none" fill="black" > B</text>
-<line x1="1160" y1="882" x2="1057" y2="882" stroke-width="0.25" />
-<line x1="1057" y1="882" x2="1057" y2="850" stroke-width="0.25" />
-<text transform="translate(1160,860.82) scale(1,-1) scale(3) " font-family="Helvetica,sans-serif" font-size="20px" stroke="none" fill="black" > BD</text>
-<line x1="1602" y1="2900" x2="1200" y2="2900" stroke-width="0.25" />
-<line x1="1200" y1="2900" x2="1200" y2="2867" stroke-width="0.25" />
-<text transform="translate(1602,2878.8) scale(1,-1) scale(3) " font-family="Helvetica,sans-serif" font-size="20px" stroke="none" fill="black" > BE</text>
-<line x1="984" y1="752" x2="984" y2="752" stroke-width="0.25" />
-<line x1="984" y1="752" x2="984" y2="719" stroke-width="0.25" />
-<text transform="translate(984,730.82) scale(1,-1) scale(3) " font-family="Helvetica,sans-serif" font-size="20px" stroke="none" fill="black" > BS</text>
-<line x1="1197" y1="687" x2="984" y2="687" stroke-width="0.25" />
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diff --git a/test.tre b/test.tre
deleted file mode 100644
index 1cd993b..0000000
--- a/test.tre
+++ /dev/null
@@ -1,2 +0,0 @@
-[Neighbor-Joining]
-((((((((BE:0.0825927,P:0.153407):0.0370163,PX:0.140484):0.0206152,TG:0.116135):0.0130982,(J:0.107365,TC:0.169635):0.0487143):0.0119838,FEC:0.0878599):0.0537579,((GS:0.0458125,SW:0.0601875):0.0308091,ML:0.0646909):0.180477):0.0844158,((((((CC:0.043939,DC:0.043061):0.0803125,SR:0.107188):0.23813,(FL:0.0489071,FV:0.0600929):0.241745):0.0271685,((((HA:0.0854926,HG:0.0135074):0.0348555,HV:0.0846445):0.0281473,HH:0.117103):0.0771303,TR:0.24412):0.0547612):0.0107292,(((CPB:0.0113299,CPC:0.03467 [...]
--
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