[med-svn] [bioimagesuite] branch master updated (5c549a5 -> ea6bbcb)
Andreas Tille
tille at debian.org
Mon Nov 20 15:20:36 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository bioimagesuite.
from 5c549a5 Take over packaging from SVN to Git
new c6d76e8 New upstream version 2.0
new aad08d7 Merge tag 'upstream/2.0'
new 9983158 Re-add debian/ dir
new ea6bbcb Add some piece of documentation I've found on my local disk
The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
Registration/dvSparseMatrix.h | 465 +
bioimagesuite30_src/BioImageSuiteMacros.cmake | 366 +
bioimagesuite30_src/BioImageSuite_Description.txt | 36 +
bioimagesuite30_src/BioImageSuite_License.txt | 340 +
bioimagesuite30_src/BioImageSuite_ShortLicense.txt | 50 +
bioimagesuite30_src/CMakeLists.txt | 197 +
bioimagesuite30_src/CMakeOptions.cmake | 573 +
bioimagesuite30_src/CPackOptions.cmake | 319 +
bioimagesuite30_src/CTestCustom.cmake.in | 3 +
bioimagesuite30_src/Common/CMakeLists.txt | 231 +
bioimagesuite30_src/Common/nifti1_io.c | 6415 +++++
bioimagesuite30_src/Common/vtkTemplateAliasMacro.h | 148 +
bioimagesuite30_src/Common/vtkafBVImageReader.cpp | 390 +
bioimagesuite30_src/Common/vtkafBVImageReader.h | 167 +
bioimagesuite30_src/Common/vtkafBVImageWriter.cpp | 236 +
bioimagesuite30_src/Common/vtkafBVImageWriter.h | 176 +
.../Common/vtkbisCylinderSource.cpp | 255 +
bioimagesuite30_src/Common/vtkbisCylinderSource.h | 85 +
bioimagesuite30_src/Common/vtkbisDICOMReader.cpp | 503 +
bioimagesuite30_src/Common/vtkbisDICOMReader.h | 142 +
.../Common/vtkbisGDCMImageReader.cpp | 1308 +
bioimagesuite30_src/Common/vtkbisGDCMImageReader.h | 306 +
bioimagesuite30_src/Common/vtkbisImageHeader.cpp | 2954 ++
bioimagesuite30_src/Common/vtkbisImageHeader.h | 335 +
bioimagesuite30_src/Common/vtkbisImageReOrient.cpp | 323 +
bioimagesuite30_src/Common/vtkbisImageReOrient.h | 145 +
bioimagesuite30_src/Common/vtkbisImageResample.cpp | 54 +
bioimagesuite30_src/Common/vtkbisImageResample.h | 67 +
bioimagesuite30_src/Common/vtkbisImageReslice.cpp | 52 +
bioimagesuite30_src/Common/vtkbisImageReslice.h | 70 +
.../Common/vtkbisNIFTIExtension.cpp | 143 +
bioimagesuite30_src/Common/vtkbisNIFTIExtension.h | 80 +
.../Common/vtkbisNIFTIExtensionsList.cpp | 243 +
.../Common/vtkbisNIFTIExtensionsList.h | 106 +
bioimagesuite30_src/Common/vtkbisTestUtil.cpp | 412 +
bioimagesuite30_src/Common/vtkbisTestUtil.h | 87 +
.../Common/vtkjoColoredSphereSource.cpp | 361 +
.../Common/vtkjoColoredSphereSource.h | 113 +
bioimagesuite30_src/Common/vtkjoROCFilter.cpp | 212 +
bioimagesuite30_src/Common/vtkjoROCFilter.h | 111 +
bioimagesuite30_src/Common/vtkjoSphereSource.cxx | 566 +
bioimagesuite30_src/Common/vtkjoSphereSource.h | 176 +
bioimagesuite30_src/Common/vtkjoStatistics.cpp | 91 +
bioimagesuite30_src/Common/vtkjoStatistics.h | 60 +
.../Common/vtkokImageAccumulate.cpp | 440 +
bioimagesuite30_src/Common/vtkokImageAccumulate.h | 168 +
bioimagesuite30_src/Common/vtkpxAbstractMatrix.cpp | 104 +
bioimagesuite30_src/Common/vtkpxAbstractMatrix.h | 155 +
.../Common/vtkpxAnalyzeImageSource.cpp | 589 +
.../Common/vtkpxAnalyzeImageSource.h | 183 +
.../Common/vtkpxAnalyzeImageSourceOld.cpp | 672 +
.../Common/vtkpxAnalyzeImageSourceOld.h | 191 +
.../Common/vtkpxAnalyzeImageWriter.cpp | 354 +
.../Common/vtkpxAnalyzeImageWriter.h | 139 +
.../Common/vtkpxAppendComponents.cpp | 185 +
bioimagesuite30_src/Common/vtkpxAppendComponents.h | 89 +
bioimagesuite30_src/Common/vtkpxBSpline.cpp | 318 +
bioimagesuite30_src/Common/vtkpxBSpline.h | 141 +
bioimagesuite30_src/Common/vtkpxBaseCurve.cpp | 2357 ++
bioimagesuite30_src/Common/vtkpxBaseCurve.h | 309 +
.../Common/vtkpxCrossHairSource.cpp | 128 +
bioimagesuite30_src/Common/vtkpxCrossHairSource.h | 123 +
.../Common/vtkpxDataArrayUndoStack.cpp | 80 +
.../Common/vtkpxDataArrayUndoStack.h | 75 +
.../Common/vtkpxEpilepsyCSIReader.cpp | 236 +
.../Common/vtkpxEpilepsyCSIReader.h | 116 +
.../Common/vtkpxGenericUndoStack.cpp | 246 +
bioimagesuite30_src/Common/vtkpxGenericUndoStack.h | 99 +
.../Common/vtkpxImageComponentsToFrames.cpp | 192 +
.../Common/vtkpxImageComponentsToFrames.h | 110 +
bioimagesuite30_src/Common/vtkpxImageExtract.cpp | 781 +
bioimagesuite30_src/Common/vtkpxImageExtract.h | 185 +
.../Common/vtkpxImageExtractVOI.cpp | 219 +
bioimagesuite30_src/Common/vtkpxImageExtractVOI.h | 121 +
.../Common/vtkpxImageReplaceSlice.cpp | 198 +
.../Common/vtkpxImageReplaceSlice.h | 133 +
bioimagesuite30_src/Common/vtkpxMath.cpp | 1126 +
bioimagesuite30_src/Common/vtkpxMath.h | 146 +
bioimagesuite30_src/Common/vtkpxMatrix.cpp | 3029 +++
bioimagesuite30_src/Common/vtkpxMatrix.h | 337 +
.../Common/vtkpxOpenIGTLinkClient.cpp | 421 +
.../Common/vtkpxOpenIGTLinkClient.h | 100 +
.../Common/vtkpxOpenIGTLinkClientObserver.cpp | 66 +
.../Common/vtkpxOpenIGTLinkClientObserver.h | 68 +
.../Common/vtkpxOpenIGTLinkServer.cpp | 646 +
.../Common/vtkpxOpenIGTLinkServer.h | 173 +
.../Common/vtkpxOpenIGTLinkServerObserver.cpp | 66 +
.../Common/vtkpxOpenIGTLinkServerObserver.h | 68 +
bioimagesuite30_src/Common/vtkpxOptimizer.cpp | 957 +
bioimagesuite30_src/Common/vtkpxOptimizer.h | 185 +
.../Common/vtkpxPickerPrismSource.cpp | 501 +
.../Common/vtkpxPickerPrismSource.h | 91 +
.../Common/vtkpxSignaLXImageSource.cpp | 364 +
.../Common/vtkpxSignaLXImageSource.h | 101 +
.../Common/vtkpxSimpleImageToImageFilter.cpp | 163 +
.../Common/vtkpxSimpleImageToImageFilter.h | 118 +
...kpxStructuredPointsToStructuredPointsFilter.cpp | 103 +
...vtkpxStructuredPointsToStructuredPointsFilter.h | 87 +
.../Common/vtkpxTensorBSplineTransform.cpp | 1472 +
.../Common/vtkpxTensorBSplineTransform.h | 290 +
bioimagesuite30_src/Common/vtkpxTestOptimizer.cpp | 217 +
bioimagesuite30_src/Common/vtkpxTestOptimizer.h | 115 +
bioimagesuite30_src/Common/vtkpxUtil.cpp | 1057 +
bioimagesuite30_src/Common/vtkpxUtil.h | 232 +
.../Common/vtkpxVVLinkConnectorNew.cpp | 1446 +
.../Common/vtkpxVVLinkConnectorNew.h | 216 +
bioimagesuite30_src/Common/znzlib.c | 309 +
bioimagesuite30_src/CompilingBioImageSuite.html | 212 +
bioimagesuite30_src/Connectivity/CMakeLists.txt | 107 +
.../Connectivity/vtkbisConnectivityUtility.cpp | 759 +
.../Connectivity/vtkbisConnectivityUtility.h | 77 +
.../Connectivity/vtkbisCsfWmMotionCorrection.cpp | 351 +
.../Connectivity/vtkbisCsfWmMotionCorrection.h | 104 +
.../vtkbisDijkstraGraphGeodesicPath.cpp | 615 +
.../Connectivity/vtkbisDijkstraGraphGeodesicPath.h | 212 +
.../Connectivity/vtkbisDisplayROIMean.cpp | 151 +
.../Connectivity/vtkbisDisplayROIMean.h | 73 +
.../Connectivity/vtkbisImageTemporalSmoothing.cpp | 226 +
.../Connectivity/vtkbisImageTemporalSmoothing.h | 88 +
.../vtkbisImageTimeSeriesNormalize.cpp | 194 +
.../Connectivity/vtkbisImageTimeSeriesNormalize.h | 84 +
.../Connectivity/vtkbisIntrinsicConnMap.cpp | 1524 ++
.../Connectivity/vtkbisIntrinsicConnMap.h | 142 +
.../Connectivity/vtkbisIpsilateralConnMap.cpp | 2780 ++
.../Connectivity/vtkbisIpsilateralConnMap.h | 161 +
.../Connectivity/vtkbisMedianTemporalSmoothing.cpp | 207 +
.../Connectivity/vtkbisMedianTemporalSmoothing.h | 100 +
.../Connectivity/vtkbisROICorrelation.cpp | 212 +
.../Connectivity/vtkbisROICorrelation.h | 94 +
bioimagesuite30_src/Connectivity/vtkbisROIMean.cpp | 362 +
bioimagesuite30_src/Connectivity/vtkbisROIMean.h | 113 +
.../Connectivity/vtkbisROIMean_rt.cpp | 327 +
.../Connectivity/vtkbisROIMean_rt.h | 114 +
.../vtkbisRemoveGlobalTemporalDrift.cpp | 218 +
.../Connectivity/vtkbisRemoveGlobalTemporalDrift.h | 79 +
.../Connectivity/vtkbisRemoveSliceMean.cpp | 256 +
.../Connectivity/vtkbisRemoveSliceMean.h | 76 +
.../Connectivity/vtkbisRemoveTemporalDrift.cpp | 309 +
.../Connectivity/vtkbisRemoveTemporalDrift.h | 104 +
.../Connectivity/vtkbisRemoveVolumeMean.cpp | 234 +
.../Connectivity/vtkbisRemoveVolumeMean.h | 76 +
.../vtkbisTaskBasedSeedCorrelation.cpp | 471 +
.../Connectivity/vtkbisTaskBasedSeedCorrelation.h | 108 +
.../Connectivity/vtkbisTimeSeriesCorrelation.cpp | 356 +
.../Connectivity/vtkbisTimeSeriesCorrelation.h | 104 +
.../Connectivity/vtkbisTimeSeriesMean.cpp | 94 +
.../Connectivity/vtkbisTimeSeriesMean.h | 69 +
.../Connectivity/vtkbisTimeSeriesStat.cpp | 129 +
.../Connectivity/vtkbisTimeSeriesStat.h | 78 +
.../Connectivity/vtkbisfmriToolBox.cpp | 1072 +
.../Connectivity/vtkbisfmriToolBox.h | 139 +
.../Connectivity/vtkbisfmriToolBoxOptimize.cpp | 1280 +
.../Connectivity/vtkbisfmriToolBoxOptimize.h | 143 +
.../DemonsRegistration/CMakeLists.txt | 175 +
.../DemonsRegistration/DeformableRegistration.cxx | 613 +
.../DemonsRegistration/OtherFunctions.cxx | 358 +
.../DemonsRegistration/OtherFunctions.h | 46 +
.../DemonsRegistration/firstExtendedDemon.h | 391 +
.../firstExtendedSymmetricDemon.h | 393 +
.../itkBinaryMorphologicalClosingImageFilter.h | 159 +
.../itkBinaryMorphologicalClosingImageFilter.txx | 247 +
.../itkjwsDemonsRegistrationFilter.h | 183 +
.../itkjwsDemonsRegistrationFilter.txx | 248 +
.../itkjwsDemonsRegistrationFunction.h | 301 +
.../itkjwsDemonsRegistrationFunction.txx | 343 +
.../itkjwsDenseFiniteDifferenceImageFilter.h | 234 +
.../itkjwsDenseFiniteDifferenceImageFilter.txx | 342 +
...tkjwsMultiResolutionPDEDeformableRegistration.h | 293 +
...jwsMultiResolutionPDEDeformableRegistration.txx | 533 +
.../itkjwsPDEDeformableRegistrationFilter.h | 326 +
.../itkjwsPDEDeformableRegistrationFilter.txx | 574 +
.../itkjwsPDEDeformableRegistrationFunction.h | 171 +
...itkjwsSymmetricForcesDemonsRegistrationFilter.h | 184 +
...kjwsSymmetricForcesDemonsRegistrationFilter.txx | 270 +
...kjwsSymmetricForcesDemonsRegistrationFunction.h | 265 +
...wsSymmetricForcesDemonsRegistrationFunction.txx | 386 +
.../jwsForRewritingPreprocess.cpp | 145 +
.../DemonsRegistration/jwsNewMain.cxx | 270 +
.../DemonsRegistration/jwsReadWriteImages.cpp | 284 +
.../DemonsRegistration/jwsReadWriteImages.h | 88 +
.../DemonsRegistration/jwsReadWriteImagesTest.cpp | 46 +
.../DemonsRegistration/jwsSymmetricNewMain.cxx | 270 +
.../DemonsRegistration/secondExtendedDemon.h | 742 +
.../secondExtendedSymmetricDemon.h | 743 +
.../DemonsRegistration/thirdDemon.h | 437 +
.../DemonsRegistration/thirdSymmetricDemon.h | 438 +
.../vtkjwsSymmetricDemonsRegistration.cpp | 482 +
.../vtkjwsSymmetricDemonsRegistration.h | 134 +
bioimagesuite30_src/DemonsRegistration/wook.h | 148 +
bioimagesuite30_src/GUI/CMakeLists.txt | 178 +
bioimagesuite30_src/GUI/pxtkanaheadercontrol.cpp | 393 +
bioimagesuite30_src/GUI/pxtkanaheadercontrol.h | 114 +
bioimagesuite30_src/GUI/pxvtkgadgets.cpp | 313 +
bioimagesuite30_src/GUI/pxvtkgadgets.h | 154 +
bioimagesuite30_src/GUI/pxvtktkdialog.cpp | 71 +
bioimagesuite30_src/GUI/pxvtktkdialog.h | 90 +
.../GUI/vtkbisGUINIFTIHeaderEditor.cpp | 955 +
.../GUI/vtkbisGUINIFTIHeaderEditor.h | 150 +
bioimagesuite30_src/GUI/vtkpxGUI2DImageEditor.cpp | 130 +
bioimagesuite30_src/GUI/vtkpxGUI2DImageEditor.h | 99 +
bioimagesuite30_src/GUI/vtkpxGUI2DImageViewer.cpp | 1088 +
bioimagesuite30_src/GUI/vtkpxGUI2DImageViewer.h | 219 +
.../GUI/vtkpxGUI2DSplineObjectmapViewer.cpp | 599 +
.../GUI/vtkpxGUI2DSplineObjectmapViewer.h | 174 +
bioimagesuite30_src/GUI/vtkpxGUI4DRenderer.cpp | 262 +
bioimagesuite30_src/GUI/vtkpxGUI4DRenderer.h | 121 +
.../GUI/vtkpxGUI4DSplineStackControl.cpp | 1963 ++
.../GUI/vtkpxGUI4DSplineStackControl.h | 244 +
.../GUI/vtkpxGUI4DTriangulatedStackControl.cpp | 738 +
.../GUI/vtkpxGUI4DTriangulatedStackControl.h | 175 +
.../GUI/vtkpxGUIAbstractMultisliceEditor.cpp | 1321 +
.../GUI/vtkpxGUIAbstractMultisliceEditor.h | 238 +
.../GUI/vtkpxGUIAnalyzeHeaderEditor.cpp | 536 +
.../GUI/vtkpxGUIAnalyzeHeaderEditor.h | 121 +
.../GUI/vtkpxGUIBaseCurveControl.cpp | 2835 ++
bioimagesuite30_src/GUI/vtkpxGUIBaseCurveControl.h | 218 +
.../GUI/vtkpxGUIBaseCurveEditor.cpp | 47 +
bioimagesuite30_src/GUI/vtkpxGUIBaseCurveEditor.h | 122 +
.../GUI/vtkpxGUIBaseImageViewer.cpp | 1015 +
bioimagesuite30_src/GUI/vtkpxGUIBaseImageViewer.h | 302 +
bioimagesuite30_src/GUI/vtkpxGUIBaseRenderer.cpp | 43 +
bioimagesuite30_src/GUI/vtkpxGUIBaseRenderer.h | 70 +
bioimagesuite30_src/GUI/vtkpxGUICallback.cpp | 76 +
bioimagesuite30_src/GUI/vtkpxGUICallback.h | 91 +
bioimagesuite30_src/GUI/vtkpxGUIColormapEditor.cpp | 1904 ++
bioimagesuite30_src/GUI/vtkpxGUIColormapEditor.h | 196 +
bioimagesuite30_src/GUI/vtkpxGUIComponent.cpp | 377 +
bioimagesuite30_src/GUI/vtkpxGUIComponent.h | 143 +
.../GUI/vtkpxGUIContourStackEditor.cpp | 1027 +
.../GUI/vtkpxGUIContourStackEditor.h | 135 +
.../GUI/vtkpxGUICurveImageEditor.cpp | 380 +
bioimagesuite30_src/GUI/vtkpxGUICurveImageEditor.h | 97 +
bioimagesuite30_src/GUI/vtkpxGUIFemPostControl.cpp | 980 +
bioimagesuite30_src/GUI/vtkpxGUIFemPostControl.h | 188 +
bioimagesuite30_src/GUI/vtkpxGUIMosaicViewer.cpp | 1800 ++
bioimagesuite30_src/GUI/vtkpxGUIMosaicViewer.h | 220 +
.../GUI/vtkpxGUIMultipleMosaicViewer.cpp | 451 +
.../GUI/vtkpxGUIMultipleMosaicViewer.h | 100 +
.../GUI/vtkpxGUIObjectmapMosaicEditor.cpp | 125 +
.../GUI/vtkpxGUIObjectmapMosaicEditor.h | 99 +
.../GUI/vtkpxGUIObjectmapMosaicViewer.cpp | 402 +
.../GUI/vtkpxGUIObjectmapMosaicViewer.h | 155 +
.../GUI/vtkpxGUIObjectmapOrthogonalEditor.cpp | 126 +
.../GUI/vtkpxGUIObjectmapOrthogonalEditor.h | 100 +
.../GUI/vtkpxGUIObjectmapOrthogonalViewer.cpp | 829 +
.../GUI/vtkpxGUIObjectmapOrthogonalViewer.h | 182 +
.../GUI/vtkpxGUIObjectmapSplineControl.cpp | 1116 +
.../GUI/vtkpxGUIObjectmapSplineControl.h | 300 +
.../GUI/vtkpxGUIObjectmapSplineStackControl.cpp | 1035 +
.../GUI/vtkpxGUIObjectmapSplineStackControl.h | 192 +
.../GUI/vtkpxGUIObliqueImageSliceControl.cpp | 624 +
.../GUI/vtkpxGUIObliqueImageSliceControl.h | 135 +
.../GUI/vtkpxGUIOrthogonal4DViewer.cpp | 1063 +
.../GUI/vtkpxGUIOrthogonal4DViewer.h | 173 +
.../GUI/vtkpxGUIOrthogonalViewer.cpp | 3260 +++
bioimagesuite30_src/GUI/vtkpxGUIOrthogonalViewer.h | 389 +
.../GUI/vtkpxGUIPolyDataControl.cpp | 2579 ++
bioimagesuite30_src/GUI/vtkpxGUIPolyDataControl.h | 262 +
bioimagesuite30_src/GUI/vtkpxGUIRenderer.cpp | 3120 +++
bioimagesuite30_src/GUI/vtkpxGUIRenderer.h | 284 +
bioimagesuite30_src/GUI/vtkpxGUISplineControl.cpp | 1616 ++
bioimagesuite30_src/GUI/vtkpxGUISplineControl.h | 324 +
bioimagesuite30_src/GUI/vtkpxGUISplineEditor.cpp | 320 +
bioimagesuite30_src/GUI/vtkpxGUISplineEditor.h | 174 +
.../GUI/vtkpxGUISplineStackControl.cpp | 1047 +
.../GUI/vtkpxGUISplineStackControl.h | 242 +
.../GUI/vtkpxGUITriangulatedStackControl.cpp | 613 +
.../GUI/vtkpxGUITriangulatedStackControl.h | 199 +
bioimagesuite30_src/GUI/vtkpxGUIVolumeControl.cpp | 865 +
bioimagesuite30_src/GUI/vtkpxGUIVolumeControl.h | 174 +
.../GUI/vtkpxTalairachTransform.cpp | 1289 +
bioimagesuite30_src/GUI/vtkpxTalairachTransform.h | 256 +
.../GUI/vtkpxTalairachTransformHelper.cpp | 167 +
.../GUI/vtkpxTalairachTransformHelper.h | 101 +
bioimagesuite30_src/GUI/vtkpxtkGUIlib.cpp | 62 +
bioimagesuite30_src/Graphics/CMakeLists.txt | 124 +
.../vtkCropVolumeRayCastCompositeGOHelper.cxx | 1393 +
.../vtkCropVolumeRayCastCompositeGOHelper.h | 89 +
.../vtkCropVolumeRayCastCompositeGOShadeHelper.cxx | 1482 +
.../vtkCropVolumeRayCastCompositeGOShadeHelper.h | 88 +
.../vtkCropVolumeRayCastCompositeHelper.cxx | 1321 +
.../Graphics/vtkCropVolumeRayCastCompositeHelper.h | 90 +
.../vtkCropVolumeRayCastCompositeShadeHelper.cxx | 1482 +
.../vtkCropVolumeRayCastCompositeShadeHelper.h | 88 +
.../Graphics/vtkCropVolumeRayCastMapper.cxx | 3719 +++
.../Graphics/vtkCropVolumeRayCastMapper.h | 825 +
bioimagesuite30_src/Graphics/vtkEllipseSource.cxx | 370 +
bioimagesuite30_src/Graphics/vtkEllipseSource.h | 164 +
bioimagesuite30_src/Graphics/vtkpx2DImageSlice.cpp | 400 +
bioimagesuite30_src/Graphics/vtkpx2DImageSlice.h | 153 +
.../vtkpxAddDisplacementVectorToPolyData.cpp | 159 +
.../vtkpxAddDisplacementVectorToPolyData.h | 104 +
.../Graphics/vtkpxAppendAndLabelPolyData.cpp | 785 +
.../Graphics/vtkpxAppendAndLabelPolyData.h | 156 +
bioimagesuite30_src/Graphics/vtkpxCameraInfo.cpp | 270 +
bioimagesuite30_src/Graphics/vtkpxCameraInfo.h | 122 +
bioimagesuite30_src/Graphics/vtkpxColorMapUtil.cpp | 1347 +
bioimagesuite30_src/Graphics/vtkpxColorMapUtil.h | 159 +
.../Graphics/vtkpxCurveEditUtil.cpp | 257 +
bioimagesuite30_src/Graphics/vtkpxCurveEditUtil.h | 103 +
.../Graphics/vtkpxElectrodeGridSource.cpp | 865 +
.../Graphics/vtkpxElectrodeGridSource.h | 267 +
.../Graphics/vtkpxElectrodeGridToSurfaceFilter.cpp | 561 +
.../Graphics/vtkpxElectrodeGridToSurfaceFilter.h | 192 +
.../Graphics/vtkpxElectrodeMultiGridSource.cpp | 659 +
.../Graphics/vtkpxElectrodeMultiGridSource.h | 203 +
.../Graphics/vtkpxElectrodeSource.cpp | 657 +
.../Graphics/vtkpxElectrodeSource.h | 270 +
.../Graphics/vtkpxEnclosedPipeline.cpp | 117 +
.../Graphics/vtkpxEnclosedPipeline.h | 109 +
bioimagesuite30_src/Graphics/vtkpxImageSlice.cpp | 761 +
bioimagesuite30_src/Graphics/vtkpxImageSlice.h | 176 +
.../Graphics/vtkpxMapActivationToPolyData.cpp | 376 +
.../Graphics/vtkpxMapActivationToPolyData.h | 170 +
.../Graphics/vtkpxNormalShrinkPolyData.cpp | 146 +
.../Graphics/vtkpxNormalShrinkPolyData.h | 116 +
.../Graphics/vtkpxObliqueImageSlice.cpp | 900 +
.../Graphics/vtkpxObliqueImageSlice.h | 211 +
.../Graphics/vtkpxOrthoImageSlice.cpp | 333 +
.../Graphics/vtkpxOrthoImageSlice.h | 151 +
.../Graphics/vtkpxPredictElectrodeStrip.cpp | 197 +
.../Graphics/vtkpxPredictElectrodeStrip.h | 142 +
bioimagesuite30_src/Graphics/vtkpxSurfaceUtil.cpp | 1596 ++
bioimagesuite30_src/Graphics/vtkpxSurfaceUtil.h | 173 +
bioimagesuite30_src/Graphics/vtkpxVolume.cpp | 1284 +
bioimagesuite30_src/Graphics/vtkpxVolume.h | 316 +
bioimagesuite30_src/Imaging/CMakeLists.txt | 246 +
bioimagesuite30_src/Imaging/vtkbisComputeGLM.cpp | 675 +
bioimagesuite30_src/Imaging/vtkbisComputeGLM.h | 148 +
.../Imaging/vtkbisCudaConvolution.cpp | 253 +
.../Imaging/vtkbisCudaConvolution.h | 65 +
.../Imaging/vtkbisCudaEdgeDetect.cpp | 132 +
bioimagesuite30_src/Imaging/vtkbisCudaEdgeDetect.h | 57 +
bioimagesuite30_src/Imaging/vtkbisCudaFFT.cpp | 147 +
bioimagesuite30_src/Imaging/vtkbisCudaFFT.h | 62 +
bioimagesuite30_src/Imaging/vtkbisCudaHessian.cpp | 196 +
bioimagesuite30_src/Imaging/vtkbisCudaHessian.h | 62 +
bioimagesuite30_src/Imaging/vtkbisCudaRFFT.cpp | 143 +
bioimagesuite30_src/Imaging/vtkbisCudaRFFT.h | 63 +
bioimagesuite30_src/Imaging/vtkbisFDR.cpp | 223 +
bioimagesuite30_src/Imaging/vtkbisFDR.h | 73 +
.../Imaging/vtkbisImageAverageComponents.cpp | 151 +
.../Imaging/vtkbisImageAverageComponents.h | 76 +
bioimagesuite30_src/Imaging/vtkbisImageUtil.cpp | 73 +
bioimagesuite30_src/Imaging/vtkbisImageUtil.h | 57 +
.../Imaging/vtkbisObjectmapRegularization.cpp | 406 +
.../Imaging/vtkbisObjectmapRegularization.h | 114 +
bioimagesuite30_src/Imaging/vtkbisRtoPvalue.cpp | 139 +
bioimagesuite30_src/Imaging/vtkbisRtoPvalue.h | 79 +
bioimagesuite30_src/Imaging/vtkbisRtoTmap.cpp | 128 +
bioimagesuite30_src/Imaging/vtkbisRtoTmap.h | 64 +
.../Imaging/vtkbisSiemensDWIArrange.cpp | 134 +
.../Imaging/vtkbisSiemensDWIArrange.h | 105 +
.../Imaging/vtkbisSiemensMosaicConverter.cpp | 181 +
.../Imaging/vtkbisSiemensMosaicConverter.h | 112 +
.../Imaging/vtkbisTimeSeriesNormalize.cpp | 148 +
.../Imaging/vtkbisTimeSeriesNormalize.h | 86 +
bioimagesuite30_src/Imaging/vtkbisWaver.cpp | 615 +
bioimagesuite30_src/Imaging/vtkbisWaver.h | 166 +
.../Imaging/vtkbisZscoretoPvalue.cpp | 112 +
bioimagesuite30_src/Imaging/vtkbisZscoretoPvalue.h | 59 +
bioimagesuite30_src/Imaging/vtkdsSpectUtil.cpp | 412 +
bioimagesuite30_src/Imaging/vtkdsSpectUtil.h | 58 +
bioimagesuite30_src/Imaging/vtknrImageCluster.cpp | 537 +
bioimagesuite30_src/Imaging/vtknrImageCluster.h | 136 +
.../Imaging/vtkpxAddMotionToTimeSeries.cpp | 653 +
.../Imaging/vtkpxAddMotionToTimeSeries.h | 177 +
bioimagesuite30_src/Imaging/vtkpxAverageImages.cpp | 312 +
bioimagesuite30_src/Imaging/vtkpxAverageImages.h | 136 +
.../Imaging/vtkpxBinaryImageMedian3D.cpp | 367 +
.../Imaging/vtkpxBinaryImageMedian3D.h | 103 +
.../Imaging/vtkpxCSIOffsetCorrection.cpp | 655 +
.../Imaging/vtkpxCSIOffsetCorrection.h | 183 +
.../Imaging/vtkpxCSIStackImages.cpp | 308 +
bioimagesuite30_src/Imaging/vtkpxCSIStackImages.h | 113 +
bioimagesuite30_src/Imaging/vtkpxComputeTmap.cpp | 361 +
bioimagesuite30_src/Imaging/vtkpxComputeTmap.h | 147 +
.../Imaging/vtkpxCreateCheckerBoardImage.cpp | 248 +
.../Imaging/vtkpxCreateCheckerBoardImage.h | 117 +
.../Imaging/vtkpxCreateSyntheticFmri.cpp | 508 +
.../Imaging/vtkpxCreateSyntheticFmri.h | 155 +
.../Imaging/vtkpxCreateThickSlices.cpp | 187 +
.../Imaging/vtkpxCreateThickSlices.h | 110 +
.../Imaging/vtkpxImageAddGaussianNoise.cpp | 151 +
.../Imaging/vtkpxImageAddGaussianNoise.h | 115 +
.../Imaging/vtkpxImageAddPhaseCorrection.cpp | 745 +
.../Imaging/vtkpxImageAddPhaseCorrection.h | 158 +
bioimagesuite30_src/Imaging/vtkpxImageAlgebra.cpp | 314 +
bioimagesuite30_src/Imaging/vtkpxImageAlgebra.h | 147 +
.../Imaging/vtkpxImageAttenuationCorrection.cpp | 155 +
.../Imaging/vtkpxImageAttenuationCorrection.h | 111 +
.../vtkpxImageComputeNormalizedDifference.cpp | 237 +
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.../Imaging/vtkpxImageComputeNormalizedRatio.cpp | 223 +
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.../Imaging/vtkpxImageComputeVOIStats.cpp | 198 +
.../Imaging/vtkpxImageComputeVOIStats.h | 100 +
.../Imaging/vtkpxImageCorrectNonUniformZ.cpp | 236 +
.../Imaging/vtkpxImageCorrectNonUniformZ.h | 113 +
.../Imaging/vtkpxImageCylindricalCrop.cpp | 118 +
.../Imaging/vtkpxImageCylindricalCrop.h | 98 +
.../Imaging/vtkpxImageFeatureExtract.cpp | 314 +
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.../Imaging/vtkpxImageGaussianNoiseSource.cpp | 223 +
.../Imaging/vtkpxImageGaussianNoiseSource.h | 106 +
.../Imaging/vtkpxImageHistogramEqualization.cpp | 191 +
.../Imaging/vtkpxImageHistogramEqualization.h | 103 +
bioimagesuite30_src/Imaging/vtkpxImageIDFilter.cpp | 212 +
bioimagesuite30_src/Imaging/vtkpxImageIDFilter.h | 133 +
bioimagesuite30_src/Imaging/vtkpxImageMask.cpp | 147 +
bioimagesuite30_src/Imaging/vtkpxImageMask.h | 90 +
.../Imaging/vtkpxImageNormalizeIntensity.cpp | 250 +
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.../vtkpxImageNormalizeIntensityToReference.cpp | 197 +
.../vtkpxImageNormalizeIntensityToReference.h | 104 +
.../Imaging/vtkpxImagePolarToEuclidean.cpp | 209 +
.../Imaging/vtkpxImagePolarToEuclidean.h | 102 +
.../Imaging/vtkpxImageRemoveLinearPhase.cpp | 279 +
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.../Imaging/vtkpxImageReorientTensorOrVector.cpp | 500 +
.../Imaging/vtkpxImageReorientTensorOrVector.h | 150 +
.../Imaging/vtkpxImageSincInterpolation.cpp | 222 +
.../Imaging/vtkpxImageSincInterpolation.h | 93 +
bioimagesuite30_src/Imaging/vtkpxImageStitch.cpp | 188 +
bioimagesuite30_src/Imaging/vtkpxImageStitch.h | 113 +
.../Imaging/vtkpxImageThresholdedIntersection.cpp | 209 +
.../Imaging/vtkpxImageThresholdedIntersection.h | 103 +
.../Imaging/vtkpxImageVariableSmoothing.cpp | 179 +
.../Imaging/vtkpxImageVariableSmoothing.h | 117 +
bioimagesuite30_src/Imaging/vtkpxMaximumImages.cpp | 183 +
bioimagesuite30_src/Imaging/vtkpxMaximumImages.h | 102 +
.../Imaging/vtkpxMergeFmriConventional.cpp | 998 +
.../Imaging/vtkpxMergeFmriConventional.h | 237 +
.../Imaging/vtkpxNormalizedSmoothImage.cpp | 160 +
.../Imaging/vtkpxNormalizedSmoothImage.h | 104 +
.../Imaging/vtkpxPhaseCorrectCSIData.cpp | 1401 +
.../Imaging/vtkpxPhaseCorrectCSIData.h | 252 +
bioimagesuite30_src/Imaging/vtkpxProcessFmri.cpp | 431 +
bioimagesuite30_src/Imaging/vtkpxProcessFmri.h | 132 +
.../Imaging/vtkpxProcessRawBrukerFIDImage.cpp | 1008 +
.../Imaging/vtkpxProcessRawBrukerFIDImage.h | 152 +
.../Imaging/vtkpxSimpleImageThreshold.cpp | 107 +
.../Imaging/vtkpxSimpleImageThreshold.h | 93 +
.../Imaging/vtkpxWeightedSmoothImage.cpp | 207 +
.../Imaging/vtkpxWeightedSmoothImage.h | 111 +
.../Imaging/vtkxqImageFourierConvolution.cpp | 1958 ++
.../Imaging/vtkxqImageFourierConvolution.h | 179 +
bioimagesuite30_src/Imaging/vtkxqImageHessian.cpp | 107 +
bioimagesuite30_src/Imaging/vtkxqImageHessian.h | 71 +
.../Imaging/vtkxqImageKMeansVesselnessFilter.cpp | 442 +
.../Imaging/vtkxqImageKMeansVesselnessFilter.h | 104 +
.../Imaging/vtkxqImageODFVesselnessFilter.cpp | 167 +
.../Imaging/vtkxqImageODFVesselnessFilter.h | 89 +
.../Imaging/vtkxqImageVesselEnhancement.cpp | 415 +
.../Imaging/vtkxqImageVesselEnhancement.h | 152 +
bioimagesuite30_src/Legacy/CMakeLists.txt | 94 +
bioimagesuite30_src/Legacy/vtkpxComputeStrains.cpp | 318 +
bioimagesuite30_src/Legacy/vtkpxComputeStrains.h | 122 +
bioimagesuite30_src/Legacy/vtkpxContourSource.cpp | 819 +
bioimagesuite30_src/Legacy/vtkpxContourSource.h | 160 +
bioimagesuite30_src/Legacy/vtkpxFemSolid.cpp | 1412 +
bioimagesuite30_src/Legacy/vtkpxFemSolid.h | 183 +
bioimagesuite30_src/Legacy/vtkpxShapeTracking.cpp | 840 +
bioimagesuite30_src/Legacy/vtkpxShapeTracking.h | 222 +
bioimagesuite30_src/Legacy/vtkpxSplineSource.cpp | 971 +
bioimagesuite30_src/Legacy/vtkpxSplineSource.h | 254 +
.../Legacy/vtkpxSplineSourceUndoStack.cpp | 60 +
.../Legacy/vtkpxSplineSourceUndoStack.h | 62 +
.../Legacy/vtkpxSplineStackSource.cpp | 1903 ++
.../Legacy/vtkpxSplineStackSource.h | 289 +
.../Legacy/vtkpxTriangulatedStackSource.cpp | 409 +
.../Legacy/vtkpxTriangulatedStackSource.h | 149 +
bioimagesuite30_src/Legacy/vtkpxTstackReader.cpp | 241 +
bioimagesuite30_src/Legacy/vtkpxTstackReader.h | 105 +
bioimagesuite30_src/Registration/CMakeLists.txt | 224 +
.../Registration/vtkbisTransformationTestUtil.cpp | 212 +
.../Registration/vtkbisTransformationTestUtil.h | 96 +
.../Registration/vtkokKochCoefficientSource.cpp | 439 +
.../Registration/vtkokKochCoefficientSource.h | 218 +
.../vtkpxAbstractIntensityRegistration.cpp | 662 +
.../vtkpxAbstractIntensityRegistration.h | 369 +
.../Registration/vtkpxAbstractRPMRegistration.cpp | 154 +
.../Registration/vtkpxAbstractRPMRegistration.h | 152 +
.../vtkpxArticulatedJointTransform.cpp | 1271 +
.../Registration/vtkpxArticulatedJointTransform.h | 327 +
.../vtkpxBSplinePriorRPMRegistration.cpp | 434 +
.../vtkpxBSplinePriorRPMRegistration.h | 113 +
.../Registration/vtkpxBSplineRPMRegistration.cpp | 556 +
.../Registration/vtkpxBSplineRPMRegistration.h | 136 +
.../Registration/vtkpxBaseGridTransform.cpp | 802 +
.../Registration/vtkpxBaseGridTransform.h | 149 +
.../Registration/vtkpxComboTransform.cpp | 580 +
.../Registration/vtkpxComboTransform.h | 227 +
.../Registration/vtkpxDistortionCorrection.cpp | 428 +
.../Registration/vtkpxDistortionCorrection.h | 184 +
.../Registration/vtkpxGridTransform.cpp | 1791 ++
.../Registration/vtkpxGridTransform.h | 337 +
.../Registration/vtkpxJointHistogram.cpp | 1714 ++
.../Registration/vtkpxJointHistogram.h | 282 +
.../Registration/vtkpxLinearMotionCorrect.cpp | 628 +
.../Registration/vtkpxLinearMotionCorrect.h | 203 +
.../Registration/vtkpxLinearRPMRegistration.cpp | 241 +
.../Registration/vtkpxLinearRPMRegistration.h | 107 +
.../Registration/vtkpxLinearRegistration.cpp | 686 +
.../Registration/vtkpxLinearRegistration.h | 314 +
.../Registration/vtkpxLinearTransform.cpp | 866 +
.../Registration/vtkpxLinearTransform.h | 182 +
.../vtkpxMidlineSymmetricRegistration.cpp | 118 +
.../vtkpxMidlineSymmetricRegistration.h | 88 +
.../vtkpxNonLinearIntegratedRegistration.cpp | 553 +
.../vtkpxNonLinearIntegratedRegistration.h | 186 +
.../vtkpxNonLinearLabelRegistration.cpp | 846 +
.../Registration/vtkpxNonLinearLabelRegistration.h | 344 +
.../Registration/vtkpxNonLinearRegistration.cpp | 873 +
.../Registration/vtkpxNonLinearRegistration.h | 371 +
.../Registration/vtkpxPolyAbstractTransform.cpp | 516 +
.../Registration/vtkpxPolyAbstractTransform.h | 163 +
.../Registration/vtkpxPolySimilarityTransform.cpp | 1279 +
.../Registration/vtkpxPolySimilarityTransform.h | 227 +
.../Registration/vtkpxRPMCorrespondenceFinder.cpp | 1319 +
.../Registration/vtkpxRPMCorrespondenceFinder.h | 346 +
.../Registration/vtkpxRegistration.cpp | 2134 ++
.../Registration/vtkpxRegistration.h | 224 +
.../Registration/vtkpxSimilarityTransform.cpp | 1061 +
.../Registration/vtkpxSimilarityTransform.h | 185 +
.../Registration/vtkpxSparseMatrix.cpp | 466 +
.../Registration/vtkpxSparseMatrix.h | 172 +
.../Registration/vtkpxTPSRPMRegistration.cpp | 388 +
.../Registration/vtkpxTPSRPMRegistration.h | 110 +
.../Registration/vtkpxTransformationUtil.cpp | 1169 +
.../Registration/vtkpxTransformationUtil.h | 170 +
.../vtkpxWeightedLandmarkTransform.cpp | 399 +
.../Registration/vtkpxWeightedLandmarkTransform.h | 78 +
bioimagesuite30_src/Segmentation/CMakeLists.txt | 169 +
.../Segmentation/itkBinaryThinningImageFilter3D.h | 185 +
.../itkBinaryThinningImageFilter3D.txx | 1000 +
.../Segmentation/itkImageToVTKImageFilter.h | 131 +
.../Segmentation/itkImageToVTKImageFilter.txx | 172 +
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.../Segmentation/itkVTKImageToImageFilter.txx | 172 +
.../Segmentation/itkpxLevelSetCallback.h | 133 +
.../Segmentation/itkpxSaturateImageFilter.h | 166 +
.../Segmentation/itkpxSaturateImageFilter.txx | 161 +
...tkpxTissueSegmentationCoupledLevelSetFunction.h | 356 +
...pxTissueSegmentationCoupledLevelSetFunction.txx | 420 +
...xTissueSegmentationCoupledLevelSetImageFilter.h | 281 +
...issueSegmentationCoupledLevelSetImageFilter.txx | 80 +
.../itkpxTissueSegmentationLevelSetFunction.h | 385 +
.../itkpxTissueSegmentationLevelSetFunction.txx | 378 +
.../itkpxTissueSegmentationLevelSetImageFilter.h | 278 +
.../itkpxTissueSegmentationLevelSetImageFilter.txx | 179 +
bioimagesuite30_src/Segmentation/vtkITKMyUtility.h | 54 +
bioimagesuite30_src/Segmentation/vtkITKUtility.h | 137 +
.../Segmentation/vtkbisBinaryThinningFilter.cpp | 168 +
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.../Segmentation/vtkjoBETHistogram.cpp | 336 +
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.../Segmentation/vtkjoBETImageFilter.cpp | 773 +
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.../vtkjoPolyDataRobustBETTraining.cpp | 629 +
.../Segmentation/vtkjoPolyDataRobustBETTraining.h | 138 +
.../Segmentation/vtkjoScalePolyData.cpp | 196 +
.../Segmentation/vtkjoScalePolyData.h | 100 +
...tkjwsSignedDanielssonDistanceMapImageFilter.cpp | 204 +
.../vtkjwsSignedDanielssonDistanceMapImageFilter.h | 122 +
.../vtkpxAbstractBiasFieldCorrection.cpp | 1042 +
.../vtkpxAbstractBiasFieldCorrection.h | 381 +
.../Segmentation/vtkpxBaseLevelSetFilter.cpp | 143 +
.../Segmentation/vtkpxBaseLevelSetFilter.h | 188 +
.../Segmentation/vtkpxBrainPreSegment.cpp | 557 +
.../Segmentation/vtkpxBrainPreSegment.h | 138 +
.../vtkpxCoupledTissueLevelSetFilter.cpp | 421 +
.../vtkpxCoupledTissueLevelSetFilter.h | 154 +
.../Segmentation/vtkpxExponentialFitT1.cpp | 676 +
.../Segmentation/vtkpxExponentialFitT1.h | 169 +
.../Segmentation/vtkpxHistogramSegmentation.cpp | 910 +
.../Segmentation/vtkpxHistogramSegmentation.h | 257 +
.../Segmentation/vtkpxImageRobustHistogram.cpp | 453 +
.../Segmentation/vtkpxImageRobustHistogram.h | 200 +
.../Segmentation/vtkpxImageTensorSpline.cpp | 879 +
.../Segmentation/vtkpxImageTensorSpline.h | 218 +
.../Segmentation/vtkpxLevelSetUtil.cpp | 382 +
.../Segmentation/vtkpxLevelSetUtil.h | 104 +
.../Segmentation/vtkpxLogExponentialFit.cpp | 313 +
.../Segmentation/vtkpxLogExponentialFit.h | 135 +
.../Segmentation/vtkpxMRFSegmentation.cpp | 1521 ++
.../Segmentation/vtkpxMRFSegmentation.h | 351 +
.../vtkpxPolynomialBiasFieldCorrection.cpp | 855 +
.../vtkpxPolynomialBiasFieldCorrection.h | 246 +
.../Segmentation/vtkpxSliceBiasFieldCorrection.cpp | 659 +
.../Segmentation/vtkpxSliceBiasFieldCorrection.h | 151 +
.../Segmentation/vtkpxTissueLevelSetFilter.cpp | 362 +
.../Segmentation/vtkpxTissueLevelSetFilter.h | 156 +
bioimagesuite30_src/Testing/CMakeLists.txt | 131 +
bioimagesuite30_src/Testing/Test_vnlmatrix.cpp | 126 +
bioimagesuite30_src/Testing/Test_vtkpxMatrix.cpp | 645 +
.../Testing/Test_vtkpxOptimizer.cpp | 67 +
bioimagesuite30_src/Testing/bisVersionTest.cpp | 128 +
bioimagesuite30_src/Testing/bisruntests.bat.in | 87 +
bioimagesuite30_src/Testing/bisruntests.sh.in | 89 +
bioimagesuite30_src/Testing/test.h | 34 +
bioimagesuite30_src/Utilities/CMakeLists.txt | 53 +
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bioimagesuite30_src/Utilities/Doxygen/doc_index.pl | 670 +
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bioimagesuite30_src/Utilities/Doxygen/header.html | 9 +
bioimagesuite30_src/bioimagesuite/CMakeLists.txt | 55 +
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.../bioimagesuite/base/pxitclimage.tcl | 1847 ++
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.../bioimagesuite/bis_algorithm/bis_ISASHN.tcl | 130 +
.../bioimagesuite/bis_algorithm/bis_algorithm.tcl | 2877 ++
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.../bis_algorithm/bis_computetensor.tcl | 284 +
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.../bioimagesuite/bis_algorithm/bis_curvatures.tcl | 131 +
.../bis_algorithm/bis_cylindricalcropimage.tcl | 154 +
.../bis_algorithm/bis_datamanager.tcl | 1748 ++
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.../bis_algorithm/bis_electrodeeditor.tcl | 1926 ++
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.../bioimagesuite/bis_algorithm/bis_treeapp.tcl | 730 +
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.../bioimagesuite/bis_algorithm/bis_util.tcl | 140 +
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.../bioimagesuite/bis_algorithm/pkgIndex.tcl | 298 +
.../bioimagesuite/datatree/CMakeLists.txt | 58 +
.../bioimagesuite/datatree/ChellyGUI_exp.tcl | 8259 ++++++
.../datatree/ElectrodeAttributeTemplate.ele | 6 +
.../bioimagesuite/datatree/biodatatree.tcl | 119 +
.../bioimagesuite/datatree/bis_treegui.tcl | 3931 +++
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bioimagesuite30_src/bioimagesuite/datatree/no.xbm | 10 +
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.../datatree/pxitclbraintreegadget.tcl | 585 +
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.../bioimagesuite/main/alarkutility.tcl | 489 +
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bioimagesuite30_src/bioimagesuite/main/bis.tcl | 411 +
.../bioimagesuite/main/bis_databasetool.tcl | 1717 ++
.../bioimagesuite/main/bis_fmri.tcl | 2918 ++
.../bioimagesuite/main/bis_fmrisetup.tcl | 4578 ++++
.../bioimagesuite/main/bis_parameterGUI.tcl | 151 +
.../bioimagesuite/main/pkgIndex.tcl | 108 +
.../bioimagesuite/main/pxitcl4dsurfaceeditor.tcl | 325 +
.../main/pxitclElectrodeMultiControl.tcl | 1978 ++
.../bioimagesuite/main/pxitclHistogramWidget.tcl | 557 +
.../bioimagesuite/main/pxitclLandmarkControl.tcl | 106 +
.../bioimagesuite/main/pxitclPolyDataControl.tcl | 114 +
.../bioimagesuite/main/pxitclanimationgadget.tcl | 735 +
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.../bioimagesuite/main/pxitclbaseimageviewer.tcl | 2059 ++
.../bioimagesuite/main/pxitclbrainregister.tcl | 806 +
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.../bioimagesuite/main/pxitclbrainstrip.tcl | 2891 ++
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.../main/pxitclmanualsurfacetransformation.tcl | 452 +
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.../bioimagesuite/main/pxitclmousechopper.tcl | 2096 ++
.../bioimagesuite/main/pxitclmouseregister.tcl | 598 +
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.../main/pxitclmultisubjectaverage.tcl | 3263 +++
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bioimagesuite30_src/database/CMakeLists.txt | 133 +
.../database/vtkbisAlgorithmTable.cpp | 374 +
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bioimagesuite30_src/database/vtkbisBaseProcedure.h | 67 +
bioimagesuite30_src/database/vtkbisDatabase.cpp | 351 +
bioimagesuite30_src/database/vtkbisDatabase.h | 106 +
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bioimagesuite30_src/database/vtkbisFilenameTable.h | 84 +
bioimagesuite30_src/database/vtkbisInjection.cpp | 215 +
bioimagesuite30_src/database/vtkbisInjection.h | 72 +
bioimagesuite30_src/database/vtkbisPatient.cpp | 206 +
bioimagesuite30_src/database/vtkbisPatient.h | 77 +
bioimagesuite30_src/database/vtkbisProtocol.cpp | 200 +
bioimagesuite30_src/database/vtkbisProtocol.h | 74 +
bioimagesuite30_src/database/vtkbisQuery.cpp | 332 +
bioimagesuite30_src/database/vtkbisQuery.h | 111 +
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bioimagesuite30_src/database/vtkbisSeries.cpp | 238 +
bioimagesuite30_src/database/vtkbisSeries.h | 85 +
bioimagesuite30_src/database/vtkbisStudy.cpp | 236 +
bioimagesuite30_src/database/vtkbisStudy.h | 78 +
bioimagesuite30_src/database/vtkbisVisit.cpp | 226 +
bioimagesuite30_src/database/vtkbisVisit.h | 93 +
bioimagesuite30_src/database/vtkimSQLite.cpp | 190 +
bioimagesuite30_src/database/vtkimSQLite.h | 68 +
bioimagesuite30_src/igtlutil/CMakeLists.txt | 61 +
bioimagesuite30_src/igtlutil/igtl_header.c | 57 +
bioimagesuite30_src/igtlutil/igtl_header.h | 97 +
bioimagesuite30_src/igtlutil/igtl_image.c | 192 +
bioimagesuite30_src/igtlutil/igtl_image.h | 167 +
bioimagesuite30_src/igtlutil/igtl_transform.c | 73 +
bioimagesuite30_src/igtlutil/igtl_transform.h | 84 +
bioimagesuite30_src/igtlutil/igtl_types.h | 115 +
bioimagesuite30_src/igtlutil/igtl_util.c | 195 +
bioimagesuite30_src/igtlutil/igtl_util.h | 77 +
bioimagesuite30_src/include/CMakeLists.txt | 60 +
bioimagesuite30_src/include/bio_f2c.h | 420 +
bioimagesuite30_src/include/bis_znzlib.h | 137 +
bioimagesuite30_src/include/clapack.h | 5118 ++++
bioimagesuite30_src/include/nifti1.h | 1469 +
bioimagesuite30_src/include/nifti1_io.h | 446 +
bioimagesuite30_src/include/pxisinf.h | 80 +
bioimagesuite30_src/include/vtkbisConfigure.h.in | 59 +
bioimagesuite30_src/installtools/CMakeLists.txt | 101 +
.../installtools/bis_creategnomeentries.cpp | 113 +
.../installtools/bis_fixlicense.cpp | 306 +
.../installtools/bis_fixscripts.cpp | 370 +
.../installtools/bis_fixscripts_base.cpp | 345 +
bioimagesuite30_src/mpjCommon/CMakeLists.txt | 111 +
.../mpjCommon/vtkmpjDiffusionProfile.cpp | 284 +
.../mpjCommon/vtkmpjDiffusionProfile.h | 140 +
.../mpjCommon/vtkmpjFrameAppend.cpp | 159 +
bioimagesuite30_src/mpjCommon/vtkmpjFrameAppend.h | 77 +
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bioimagesuite30_src/mpjCommon/vtkmpjFrameAverage.h | 77 +
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bioimagesuite30_src/mpjCommon/vtkmpjFrameExtract.h | 84 +
.../mpjCommon/vtkmpjFramePermutation.cpp | 105 +
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.../mpjCommon/vtkmpjIcosahedronSource.cpp | 465 +
.../mpjCommon/vtkmpjIcosahedronSource.h | 94 +
.../mpjCommon/vtkmpjImageBoundary.cpp | 175 +
.../mpjCommon/vtkmpjImageBoundary.h | 92 +
.../mpjCommon/vtkmpjImageHessian.cpp | 184 +
bioimagesuite30_src/mpjCommon/vtkmpjImageHessian.h | 100 +
.../mpjCommon/vtkmpjImageInterleaving.cpp | 158 +
.../mpjCommon/vtkmpjImageInterleaving.h | 79 +
.../mpjCommon/vtkmpjImagePointSource.cpp | 193 +
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.../mpjCommon/vtkmpjImageSignalToNoiseRatio.cpp | 163 +
.../mpjCommon/vtkmpjImageSignalToNoiseRatio.h | 107 +
.../mpjCommon/vtkmpjImageStatistics.cpp | 187 +
.../mpjCommon/vtkmpjImageStatistics.h | 108 +
.../mpjCommon/vtkmpjImageT2Relax.cpp | 206 +
bioimagesuite30_src/mpjCommon/vtkmpjImageT2Relax.h | 88 +
.../mpjCommon/vtkmpjImageTwoNorm.cpp | 183 +
bioimagesuite30_src/mpjCommon/vtkmpjImageTwoNorm.h | 72 +
.../mpjCommon/vtkmpjImageVesselEnhancement.cpp | 354 +
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.../mpjCommon/vtkmpjImageVesselMaximum.cpp | 190 +
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.../mpjCommon/vtkmpjPriorityQueue.cpp | 266 +
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.../mpjCommon/vtkmpjScalarsToFieldData.cpp | 104 +
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.../mpjCommon/vtkmpjSphereSubdivisionSource.cpp | 371 +
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bioimagesuite30_src/mpjCommon/vtkmpjStreamer.cpp | 771 +
bioimagesuite30_src/mpjCommon/vtkmpjStreamer.h | 319 +
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.../mpjCommon/vtkmpjTensorStreamline.cpp | 1333 +
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.../vtkmpjTensorStreamlineRegionFilter.cpp | 235 +
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.../mpjCommon/vtkmpjTensorStreamlineStatistics.cpp | 274 +
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.../mpjCommon/vtkmpjTestOptimizer.cpp | 187 +
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.../mpjCommon/vtkmpjThresholdPolyData.cpp | 301 +
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.../vtkmpjThresholdPolyDataByDistance.cpp | 157 +
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bioimagesuite30_src/mpjCommon/vtkmpjTubeFilter.cpp | 801 +
bioimagesuite30_src/mpjCommon/vtkmpjTubeFilter.h | 207 +
.../mpjCommon/vtkmpjVectorStreamline.cpp | 303 +
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.../mpjCommon/vtkmpjVectorStreamlineStatistics.cpp | 105 +
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bioimagesuite30_src/mpjCommon/vtkmpjVertexSource.h | 88 +
bioimagesuite30_src/mpjDiffusion/CMakeLists.txt | 95 +
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.../mpjDiffusion/vtkmpjImageDotProduct.cpp | 172 +
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.../mpjDiffusion/vtkmpjImageSymmetricTensor.cpp | 314 +
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.../mpjDiffusion/vtkmpjImageTensorColor.cpp | 482 +
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.../mpjDiffusion/vtkmpjImageTensorSimilarity.cpp | 360 +
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.../mpjDiffusion/vtkmpjImageTensorVariance.cpp | 212 +
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.../mpjDiffusion/vtkmpjImageToTensors.cpp | 138 +
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.../mpjDiffusion/vtkmpjImageToVectors.cpp | 102 +
.../mpjDiffusion/vtkmpjImageToVectors.h | 77 +
.../mpjDiffusion/vtkmpjLatticeAnisotropy.cpp | 264 +
.../mpjDiffusion/vtkmpjLatticeAnisotropy.h | 114 +
.../mpjDiffusion/vtkmpjQBallImaging.cpp | 315 +
.../mpjDiffusion/vtkmpjQBallImaging.h | 111 +
.../vtkmpjTensorBMatrixLeastSquares.cpp | 295 +
.../mpjDiffusion/vtkmpjTensorBMatrixLeastSquares.h | 139 +
.../mpjDiffusion/vtkmpjTensorGeometryMetrics.cpp | 169 +
.../mpjDiffusion/vtkmpjTensorGeometryMetrics.h | 99 +
.../mpjDiffusion/vtkmpjTensorLeastSquares.cpp | 295 +
.../mpjDiffusion/vtkmpjTensorLeastSquares.h | 131 +
.../vtkmpjTensorToApparentDiffusion.cpp | 324 +
.../mpjDiffusion/vtkmpjTensorToApparentDiffusion.h | 142 +
bioimagesuite30_src/mpjLevelset/CMakeLists.txt | 89 +
.../mpjLevelset/vtkmpjExtractLevelSet.cpp | 230 +
.../mpjLevelset/vtkmpjExtractLevelSet.h | 105 +
.../mpjLevelset/vtkmpjFastMarchingConnectivity.cpp | 752 +
.../mpjLevelset/vtkmpjFastMarchingConnectivity.h | 166 +
.../mpjLevelset/vtkmpjFastMarchingExtension.cpp | 555 +
.../mpjLevelset/vtkmpjFastMarchingExtension.h | 141 +
.../mpjLevelset/vtkmpjFastMarchingImageFilter.cpp | 596 +
.../mpjLevelset/vtkmpjFastMarchingImageFilter.h | 289 +
.../mpjLevelset/vtkmpjFastMarchingMethod.cpp | 741 +
.../mpjLevelset/vtkmpjFastMarchingMethod.h | 159 +
.../vtkmpjFastMarchingVesselConnectivity.cpp | 786 +
.../vtkmpjFastMarchingVesselConnectivity.h | 173 +
.../mpjLevelset/vtkmpjFastSweepingMethod.cpp | 605 +
.../mpjLevelset/vtkmpjFastSweepingMethod.h | 126 +
.../mpjLevelset/vtkmpjImageCharacteristics.cpp | 323 +
.../mpjLevelset/vtkmpjImageCharacteristics.h | 98 +
.../mpjLevelset/vtkmpjLaxConnectivity.cpp | 741 +
.../mpjLevelset/vtkmpjLaxConnectivity.h | 186 +
.../mpjLevelset/vtkmpjLaxFriedrichEuclidean.cpp | 491 +
.../mpjLevelset/vtkmpjLaxFriedrichEuclidean.h | 132 +
.../mpjLevelset/vtkmpjLaxFriedrichSweeping.cpp | 560 +
.../mpjLevelset/vtkmpjLaxFriedrichSweeping.h | 177 +
.../vtkmpjLaxFriedrichSweepingMethod.cpp | 675 +
.../mpjLevelset/vtkmpjLaxFriedrichSweepingMethod.h | 136 +
.../mpjLevelset/vtkmpjLaxFriedrichTest.cpp | 947 +
.../mpjLevelset/vtkmpjLaxFriedrichTest.h | 167 +
.../mpjLevelset/vtkmpjLevelSetMethod.cpp | 293 +
.../mpjLevelset/vtkmpjLevelSetMethod.h | 113 +
.../mpjLevelset/vtkmpjLevelSetNarrowBandFilter.cpp | 122 +
.../mpjLevelset/vtkmpjLevelSetNarrowBandFilter.h | 96 +
.../vtkmpjLevelSetNeighborhoodExtractor.cpp | 397 +
.../vtkmpjLevelSetNeighborhoodExtractor.h | 183 +
.../mpjLevelset/vtkmpjLevelSetNormal.cpp | 207 +
.../mpjLevelset/vtkmpjLevelSetNormal.h | 75 +
.../mpjLevelset/vtkmpjLevelSetSignedDistance.cpp | 228 +
.../mpjLevelset/vtkmpjLevelSetSignedDistance.h | 96 +
.../mpjLevelset/vtkmpjLevelSetTest.cpp | 141 +
.../mpjLevelset/vtkmpjLevelSetTest.h | 83 +
.../vtkmpjReinitializeLevelSetImageFilter.cpp | 295 +
.../vtkmpjReinitializeLevelSetImageFilter.h | 166 +
bioimagesuite30_src/numerics/CMakeLists.txt | 119 +
bioimagesuite30_src/numerics/f2cfix.c | 41 +
bioimagesuite30_src/numerics/f2cfix.h | 43 +
bioimagesuite30_src/numerics/fitpack.c | 27140 +++++++++++++++++++
bioimagesuite30_src/numerics/fitpack.h | 213 +
bioimagesuite30_src/numerics/linsystems.cpp | 761 +
bioimagesuite30_src/numerics/nr.h | 92 +
bioimagesuite30_src/numerics/nrutil.cpp | 813 +
bioimagesuite30_src/numerics/nrutil.h | 181 +
bioimagesuite30_src/numerics/peng_cheng_util.cpp | 588 +
bioimagesuite30_src/numerics/px3dimage.cpp | 832 +
bioimagesuite30_src/numerics/px3dimage.h | 258 +
bioimagesuite30_src/numerics/pxabaqussolid.cpp | 4647 ++++
bioimagesuite30_src/numerics/pxabaqussolid.h | 322 +
.../numerics/pxabaqusstructures.cpp | 2208 ++
bioimagesuite30_src/numerics/pxabaqusstructures.h | 320 +
.../numerics/pxchamferdistancemap.cpp | 867 +
.../numerics/pxchamferdistancemap.h | 150 +
bioimagesuite30_src/numerics/pxcontour.cpp | 1979 ++
bioimagesuite30_src/numerics/pxcontour.h | 281 +
bioimagesuite30_src/numerics/pxcontourstack.cpp | 1275 +
bioimagesuite30_src/numerics/pxcontourstack.h | 177 +
bioimagesuite30_src/numerics/pxcrystalabaqus.cpp | 2232 ++
bioimagesuite30_src/numerics/pxcrystalabaqus.h | 194 +
bioimagesuite30_src/numerics/pxfloatimage.cpp | 426 +
bioimagesuite30_src/numerics/pxfloatimage.h | 186 +
bioimagesuite30_src/numerics/pxfloatmatrix.cpp | 225 +
bioimagesuite30_src/numerics/pxfloatmatrix.h | 138 +
bioimagesuite30_src/numerics/pxfpbspline.cpp | 2512 ++
bioimagesuite30_src/numerics/pxfpbspline.h | 334 +
bioimagesuite30_src/numerics/pxfpbsplinestack.cpp | 1426 +
bioimagesuite30_src/numerics/pxfpbsplinestack.h | 191 +
bioimagesuite30_src/numerics/pxgeometrystruct.cpp | 1165 +
bioimagesuite30_src/numerics/pxgeometrystruct.h | 315 +
bioimagesuite30_src/numerics/pximage.cpp | 1540 ++
bioimagesuite30_src/numerics/pximage.h | 261 +
bioimagesuite30_src/numerics/pxmarkerclass.cpp | 454 +
bioimagesuite30_src/numerics/pxmarkerclass.h | 150 +
bioimagesuite30_src/numerics/pxregion.cpp | 756 +
bioimagesuite30_src/numerics/pxregion.h | 129 +
.../numerics/pxshapetrackingclass.cpp | 1665 ++
.../numerics/pxshapetrackingclass.h | 131 +
.../numerics/pxtriangulatedstack.cpp | 4770 ++++
bioimagesuite30_src/numerics/pxtriangulatedstack.h | 249 +
bioimagesuite30_src/numerics/pxutil.cpp | 1015 +
bioimagesuite30_src/numerics/pxutil.h | 1174 +
bioimagesuite30_src/numerics/tnt/jama_cholesky.h | 286 +
bioimagesuite30_src/numerics/tnt/jama_eig.h | 1053 +
bioimagesuite30_src/numerics/tnt/jama_lu.h | 347 +
bioimagesuite30_src/numerics/tnt/jama_qr.h | 355 +
bioimagesuite30_src/numerics/tnt/jama_svd.h | 561 +
bioimagesuite30_src/numerics/tnt/tnt.h | 93 +
bioimagesuite30_src/numerics/tnt/tnt_array1d.h | 446 +
.../numerics/tnt/tnt_array1d_utils.h | 93 +
bioimagesuite30_src/numerics/tnt/tnt_array2d.h | 463 +
.../numerics/tnt/tnt_array2d_utils.h | 150 +
bioimagesuite30_src/numerics/tnt/tnt_array3d.h | 469 +
.../numerics/tnt/tnt_array3d_utils.h | 112 +
bioimagesuite30_src/numerics/tnt/tnt_cmat.h | 613 +
.../numerics/tnt/tnt_fortran_array1d.h | 340 +
.../numerics/tnt/tnt_fortran_array1d_utils.h | 92 +
.../numerics/tnt/tnt_fortran_array2d.h | 356 +
.../numerics/tnt/tnt_fortran_array2d_utils.h | 109 +
.../numerics/tnt/tnt_fortran_array3d.h | 367 +
.../numerics/tnt/tnt_fortran_array3d_utils.h | 112 +
bioimagesuite30_src/numerics/tnt/tnt_math_utils.h | 85 +
.../numerics/tnt/tnt_sparse_matrix_csr.h | 131 +
bioimagesuite30_src/numerics/tnt/tnt_stopwatch.h | 145 +
bioimagesuite30_src/numerics/tnt/tnt_subscript.h | 82 +
bioimagesuite30_src/numerics/tnt/tnt_vec.h | 432 +
bioimagesuite30_src/numerics/tnt/tnt_version.h | 67 +
bioimagesuite30_src/pxtklib/CMakeLists.txt | 90 +
.../pxtklib/nrtk_iwidget_tabnotebook.cpp | 136 +
.../pxtklib/nrtk_iwidget_tabnotebook.h | 68 +
bioimagesuite30_src/pxtklib/pxitkcombobox.cpp | 191 +
bioimagesuite30_src/pxtklib/pxitkcombobox.h | 105 +
bioimagesuite30_src/pxtklib/pxtkapp.cpp | 704 +
bioimagesuite30_src/pxtklib/pxtkapp.h | 235 +
bioimagesuite30_src/pxtklib/pxtkbase.cpp | 150 +
bioimagesuite30_src/pxtklib/pxtkbase.h | 114 +
bioimagesuite30_src/pxtklib/pxtkbutton.cpp | 87 +
bioimagesuite30_src/pxtklib/pxtkbutton.h | 85 +
bioimagesuite30_src/pxtklib/pxtkcheckbutton.cpp | 107 +
bioimagesuite30_src/pxtklib/pxtkcheckbutton.h | 88 +
bioimagesuite30_src/pxtklib/pxtkcomplexwidgets.cpp | 571 +
bioimagesuite30_src/pxtklib/pxtkcomplexwidgets.h | 207 +
bioimagesuite30_src/pxtklib/pxtkdialog.cpp | 256 +
bioimagesuite30_src/pxtklib/pxtkdialog.h | 117 +
bioimagesuite30_src/pxtklib/pxtkentry.cpp | 88 +
bioimagesuite30_src/pxtklib/pxtkentry.h | 86 +
bioimagesuite30_src/pxtklib/pxtkeventobj.cpp | 348 +
bioimagesuite30_src/pxtklib/pxtkeventobj.h | 120 +
bioimagesuite30_src/pxtklib/pxtkframe.cpp | 256 +
bioimagesuite30_src/pxtklib/pxtkframe.h | 115 +
bioimagesuite30_src/pxtklib/pxtkgadget.cpp | 243 +
bioimagesuite30_src/pxtklib/pxtkgadget.h | 109 +
bioimagesuite30_src/pxtklib/pxtkgadgets.h | 121 +
bioimagesuite30_src/pxtklib/pxtkinfodialog.cpp | 141 +
bioimagesuite30_src/pxtklib/pxtkinfodialog.h | 93 +
bioimagesuite30_src/pxtklib/pxtklabel.cpp | 103 +
bioimagesuite30_src/pxtklib/pxtklabel.h | 83 +
bioimagesuite30_src/pxtklib/pxtklistbox.cpp | 160 +
bioimagesuite30_src/pxtklib/pxtklistbox.h | 95 +
bioimagesuite30_src/pxtklib/pxtkmenu.cpp | 169 +
bioimagesuite30_src/pxtklib/pxtkmenu.h | 100 +
bioimagesuite30_src/pxtklib/pxtkmenubutton.cpp | 77 +
bioimagesuite30_src/pxtklib/pxtkmenubutton.h | 84 +
bioimagesuite30_src/pxtklib/pxtkmessage.cpp | 75 +
bioimagesuite30_src/pxtklib/pxtkmessage.h | 82 +
bioimagesuite30_src/pxtklib/pxtkoptionmenu.cpp | 197 +
bioimagesuite30_src/pxtklib/pxtkoptionmenu.h | 97 +
bioimagesuite30_src/pxtklib/pxtkradiobutton.cpp | 104 +
bioimagesuite30_src/pxtklib/pxtkradiobutton.h | 92 +
bioimagesuite30_src/pxtklib/pxtkscale.cpp | 198 +
bioimagesuite30_src/pxtklib/pxtkscale.h | 95 +
bioimagesuite30_src/pxtklib/pxtkscrollbar.cpp | 101 +
bioimagesuite30_src/pxtklib/pxtkscrollbar.h | 89 +
bioimagesuite30_src/pxtklib/pxtkseldialog.cpp | 377 +
bioimagesuite30_src/pxtklib/pxtkseldialog.h | 139 +
bioimagesuite30_src/pxtklib/pxtktext.cpp | 149 +
bioimagesuite30_src/pxtklib/pxtktext.h | 83 +
bioimagesuite30_src/pxtklib/pxtktoplevel.cpp | 166 +
bioimagesuite30_src/pxtklib/pxtktoplevel.h | 94 +
bioimagesuite30_src/pxtklib/pxtkwaitdialog.cpp | 138 +
bioimagesuite30_src/pxtklib/pxtkwaitdialog.h | 102 +
debian/README.preconditions | 22 +
1320 files changed, 522425 insertions(+)
create mode 100755 Registration/dvSparseMatrix.h
create mode 100644 bioimagesuite30_src/BioImageSuiteMacros.cmake
create mode 100644 bioimagesuite30_src/BioImageSuite_Description.txt
create mode 100644 bioimagesuite30_src/BioImageSuite_License.txt
create mode 100644 bioimagesuite30_src/BioImageSuite_ShortLicense.txt
create mode 100644 bioimagesuite30_src/CMakeLists.txt
create mode 100644 bioimagesuite30_src/CMakeOptions.cmake
create mode 100644 bioimagesuite30_src/CPackOptions.cmake
create mode 100644 bioimagesuite30_src/CTestCustom.cmake.in
create mode 100644 bioimagesuite30_src/Common/CMakeLists.txt
create mode 100644 bioimagesuite30_src/Common/nifti1_io.c
create mode 100644 bioimagesuite30_src/Common/vtkTemplateAliasMacro.h
create mode 100644 bioimagesuite30_src/Common/vtkafBVImageReader.cpp
create mode 100644 bioimagesuite30_src/Common/vtkafBVImageReader.h
create mode 100644 bioimagesuite30_src/Common/vtkafBVImageWriter.cpp
create mode 100644 bioimagesuite30_src/Common/vtkafBVImageWriter.h
create mode 100644 bioimagesuite30_src/Common/vtkbisCylinderSource.cpp
create mode 100644 bioimagesuite30_src/Common/vtkbisCylinderSource.h
create mode 100644 bioimagesuite30_src/Common/vtkbisDICOMReader.cpp
create mode 100644 bioimagesuite30_src/Common/vtkbisDICOMReader.h
create mode 100644 bioimagesuite30_src/Common/vtkbisGDCMImageReader.cpp
create mode 100644 bioimagesuite30_src/Common/vtkbisGDCMImageReader.h
create mode 100644 bioimagesuite30_src/Common/vtkbisImageHeader.cpp
create mode 100644 bioimagesuite30_src/Common/vtkbisImageHeader.h
create mode 100644 bioimagesuite30_src/Common/vtkbisImageReOrient.cpp
create mode 100644 bioimagesuite30_src/Common/vtkbisImageReOrient.h
create mode 100644 bioimagesuite30_src/Common/vtkbisImageResample.cpp
create mode 100644 bioimagesuite30_src/Common/vtkbisImageResample.h
create mode 100644 bioimagesuite30_src/Common/vtkbisImageReslice.cpp
create mode 100644 bioimagesuite30_src/Common/vtkbisImageReslice.h
create mode 100644 bioimagesuite30_src/Common/vtkbisNIFTIExtension.cpp
create mode 100644 bioimagesuite30_src/Common/vtkbisNIFTIExtension.h
create mode 100644 bioimagesuite30_src/Common/vtkbisNIFTIExtensionsList.cpp
create mode 100644 bioimagesuite30_src/Common/vtkbisNIFTIExtensionsList.h
create mode 100644 bioimagesuite30_src/Common/vtkbisTestUtil.cpp
create mode 100644 bioimagesuite30_src/Common/vtkbisTestUtil.h
create mode 100644 bioimagesuite30_src/Common/vtkjoColoredSphereSource.cpp
create mode 100644 bioimagesuite30_src/Common/vtkjoColoredSphereSource.h
create mode 100644 bioimagesuite30_src/Common/vtkjoROCFilter.cpp
create mode 100644 bioimagesuite30_src/Common/vtkjoROCFilter.h
create mode 100644 bioimagesuite30_src/Common/vtkjoSphereSource.cxx
create mode 100644 bioimagesuite30_src/Common/vtkjoSphereSource.h
create mode 100644 bioimagesuite30_src/Common/vtkjoStatistics.cpp
create mode 100644 bioimagesuite30_src/Common/vtkjoStatistics.h
create mode 100644 bioimagesuite30_src/Common/vtkokImageAccumulate.cpp
create mode 100644 bioimagesuite30_src/Common/vtkokImageAccumulate.h
create mode 100644 bioimagesuite30_src/Common/vtkpxAbstractMatrix.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxAbstractMatrix.h
create mode 100644 bioimagesuite30_src/Common/vtkpxAnalyzeImageSource.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxAnalyzeImageSource.h
create mode 100644 bioimagesuite30_src/Common/vtkpxAnalyzeImageSourceOld.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxAnalyzeImageSourceOld.h
create mode 100644 bioimagesuite30_src/Common/vtkpxAnalyzeImageWriter.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxAnalyzeImageWriter.h
create mode 100644 bioimagesuite30_src/Common/vtkpxAppendComponents.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxAppendComponents.h
create mode 100644 bioimagesuite30_src/Common/vtkpxBSpline.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxBSpline.h
create mode 100644 bioimagesuite30_src/Common/vtkpxBaseCurve.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxBaseCurve.h
create mode 100644 bioimagesuite30_src/Common/vtkpxCrossHairSource.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxCrossHairSource.h
create mode 100644 bioimagesuite30_src/Common/vtkpxDataArrayUndoStack.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxDataArrayUndoStack.h
create mode 100644 bioimagesuite30_src/Common/vtkpxEpilepsyCSIReader.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxEpilepsyCSIReader.h
create mode 100644 bioimagesuite30_src/Common/vtkpxGenericUndoStack.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxGenericUndoStack.h
create mode 100644 bioimagesuite30_src/Common/vtkpxImageComponentsToFrames.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxImageComponentsToFrames.h
create mode 100644 bioimagesuite30_src/Common/vtkpxImageExtract.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxImageExtract.h
create mode 100644 bioimagesuite30_src/Common/vtkpxImageExtractVOI.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxImageExtractVOI.h
create mode 100644 bioimagesuite30_src/Common/vtkpxImageReplaceSlice.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxImageReplaceSlice.h
create mode 100644 bioimagesuite30_src/Common/vtkpxMath.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxMath.h
create mode 100644 bioimagesuite30_src/Common/vtkpxMatrix.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxMatrix.h
create mode 100644 bioimagesuite30_src/Common/vtkpxOpenIGTLinkClient.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxOpenIGTLinkClient.h
create mode 100644 bioimagesuite30_src/Common/vtkpxOpenIGTLinkClientObserver.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxOpenIGTLinkClientObserver.h
create mode 100644 bioimagesuite30_src/Common/vtkpxOpenIGTLinkServer.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxOpenIGTLinkServer.h
create mode 100644 bioimagesuite30_src/Common/vtkpxOpenIGTLinkServerObserver.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxOpenIGTLinkServerObserver.h
create mode 100644 bioimagesuite30_src/Common/vtkpxOptimizer.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxOptimizer.h
create mode 100644 bioimagesuite30_src/Common/vtkpxPickerPrismSource.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxPickerPrismSource.h
create mode 100644 bioimagesuite30_src/Common/vtkpxSignaLXImageSource.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxSignaLXImageSource.h
create mode 100644 bioimagesuite30_src/Common/vtkpxSimpleImageToImageFilter.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxSimpleImageToImageFilter.h
create mode 100644 bioimagesuite30_src/Common/vtkpxStructuredPointsToStructuredPointsFilter.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxStructuredPointsToStructuredPointsFilter.h
create mode 100644 bioimagesuite30_src/Common/vtkpxTensorBSplineTransform.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxTensorBSplineTransform.h
create mode 100644 bioimagesuite30_src/Common/vtkpxTestOptimizer.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxTestOptimizer.h
create mode 100644 bioimagesuite30_src/Common/vtkpxUtil.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxUtil.h
create mode 100644 bioimagesuite30_src/Common/vtkpxVVLinkConnectorNew.cpp
create mode 100644 bioimagesuite30_src/Common/vtkpxVVLinkConnectorNew.h
create mode 100644 bioimagesuite30_src/Common/znzlib.c
create mode 100644 bioimagesuite30_src/CompilingBioImageSuite.html
create mode 100644 bioimagesuite30_src/Connectivity/CMakeLists.txt
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisConnectivityUtility.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisConnectivityUtility.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisCsfWmMotionCorrection.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisCsfWmMotionCorrection.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisDijkstraGraphGeodesicPath.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisDijkstraGraphGeodesicPath.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisDisplayROIMean.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisDisplayROIMean.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisImageTemporalSmoothing.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisImageTemporalSmoothing.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisImageTimeSeriesNormalize.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisImageTimeSeriesNormalize.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisIntrinsicConnMap.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisIntrinsicConnMap.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisIpsilateralConnMap.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisIpsilateralConnMap.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisMedianTemporalSmoothing.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisMedianTemporalSmoothing.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisROICorrelation.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisROICorrelation.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisROIMean.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisROIMean.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisROIMean_rt.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisROIMean_rt.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisRemoveGlobalTemporalDrift.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisRemoveGlobalTemporalDrift.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisRemoveSliceMean.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisRemoveSliceMean.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisRemoveTemporalDrift.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisRemoveTemporalDrift.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisRemoveVolumeMean.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisRemoveVolumeMean.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisTaskBasedSeedCorrelation.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisTaskBasedSeedCorrelation.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisTimeSeriesCorrelation.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisTimeSeriesCorrelation.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisTimeSeriesMean.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisTimeSeriesMean.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisTimeSeriesStat.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisTimeSeriesStat.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisfmriToolBox.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisfmriToolBox.h
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisfmriToolBoxOptimize.cpp
create mode 100644 bioimagesuite30_src/Connectivity/vtkbisfmriToolBoxOptimize.h
create mode 100644 bioimagesuite30_src/DemonsRegistration/CMakeLists.txt
create mode 100644 bioimagesuite30_src/DemonsRegistration/DeformableRegistration.cxx
create mode 100644 bioimagesuite30_src/DemonsRegistration/OtherFunctions.cxx
create mode 100644 bioimagesuite30_src/DemonsRegistration/OtherFunctions.h
create mode 100644 bioimagesuite30_src/DemonsRegistration/firstExtendedDemon.h
create mode 100644 bioimagesuite30_src/DemonsRegistration/firstExtendedSymmetricDemon.h
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