[med-svn] [r-cran-fields] 01/12: Inject r-cran-fields

Andreas Tille tille at debian.org
Wed Nov 29 15:21:53 UTC 2017


This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository r-cran-fields.

commit b4b8a06cf2c4ffbee49da7ba959835bcfc5a0698
Author: Andreas Tille <tille at debian.org>
Date:   Tue Jun 28 14:55:24 2016 +0000

    Inject r-cran-fields
---
 debian/README.test         |  8 ++++++++
 debian/changelog           |  5 +++++
 debian/compat              |  1 +
 debian/control             | 36 ++++++++++++++++++++++++++++++++++++
 debian/copyright           | 30 ++++++++++++++++++++++++++++++
 debian/docs                |  3 +++
 debian/rules               |  3 +++
 debian/source/format       |  1 +
 debian/tests/control       |  3 +++
 debian/tests/run-unit-test | 38 ++++++++++++++++++++++++++++++++++++++
 debian/watch               |  2 ++
 11 files changed, 130 insertions(+)

diff --git a/debian/README.test b/debian/README.test
new file mode 100644
index 0000000..55a9142
--- /dev/null
+++ b/debian/README.test
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+To run the unit tests provided by the package you can do
+
+   sh  run-unit-test
+
+in this directory.
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..163252d
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+r-cran-fields (8.4-1-1) UNRELEASED; urgency=low
+
+  * Initial release (closes: #???)
+
+ -- Andreas Tille <tille at debian.org>  Tue, 28 Jun 2016 16:10:42 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..63b967c
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,36 @@
+Source: r-cran-fields
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               cdbs,
+               r-base-dev,
+               r-cran-spam,
+               r-cran-maps
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-fields/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-fields/trunk/
+Homepage: https://cran.r-project.org/web/packages/fields
+
+Package: r-cran-fields
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${misc:Depends},
+         ${R:Depends},
+         r-cran-spam,
+         r-cran-maps
+Description: GNU R tools for spatial data
+ For curve, surface and function fitting with an emphasis on splines,
+ spatial data and spatial statistics. The major methods include cubic,
+ and thin plate splines, Kriging and compact covariances for large data
+ sets. The splines and Kriging methods are supported by functions that
+ can determine the smoothing parameter (nugget and sill variance) and
+ other covariance parameters by cross validation and also by restricted
+ maximum likelihood. For Kriging there is an easy to use function that
+ also estimates the correlation scale (range). A major feature is that
+ any covariance function implemented in R and following a simple fields
+ format can be used for spatial prediction. There are also many useful
+ functions for plotting and working with spatial data as images. This
+ package also contains an implementation of sparse matrix methods for
+ large spatial data sets.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..39b2219
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,30 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: fields
+Upstream-Contact: Douglas Nychka <nychka at ucar.edu>
+Source: https://cran.r-project.org/web/packages/fields
+
+Files: *
+Copyright: 2009-2016 Douglas Nychka, Reinhard Furrer, John Paige, Stephan Sain
+License: GPL-2+
+
+Files: debian/*
+Copyright: 2016 Andreas Tille <tille at debian.org>
+License: GPL-2+
+
+License: GPL-2+
+    This program is free software; you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation; either version 2 of the License, or
+    (at your option) any later version.
+ .
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+ .
+    You should have received a copy of the GNU General Public License
+    along with this program; if not, write to the Free Software
+    Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
+ .
+ On Debian systems, the complete text of the GNU General Public
+ License can be found in `/usr/share/common-licenses/GPL-2'.
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..3adf0d6
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1,3 @@
+debian/README.test
+debian/tests/run-unit-test
+tests
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..2fbba2d
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,3 @@
+#!/usr/bin/make -f
+
+include /usr/share/R/debian/r-cran.mk
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/tests/control b/debian/tests/control
new file mode 100644
index 0000000..25377fc
--- /dev/null
+++ b/debian/tests/control
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @, r-cran-runit
+Restrictions: allow-stderr
diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test
new file mode 100644
index 0000000..c15756a
--- /dev/null
+++ b/debian/tests/run-unit-test
@@ -0,0 +1,38 @@
+#!/bin/sh -e
+
+pkg=r-cran-fields
+
+# The saved result files do contain some differences in metadata and we also
+# need to ignore version differences of R
+filter() {
+    grep -v -e '^R version' \
+        -e '^Copyright (C)' \
+        -e '^R : Copyright 20' \
+        -e '^Version 2.0' \
+        -e '^Platform:' \
+        -e '^Spam version .* is loaded.' \
+        $1 | \
+    sed -e '/^> *proc\.time()$/,$d'
+}
+
+if [ "$ADTTMP" = "" ] ; then
+  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+fi
+cd $ADTTMP
+cp /usr/share/doc/${pkg}/tests/* $ADTTMP
+gunzip *.gz
+for htest in `ls *.R | sed 's/\.R$//'` ; do
+   LC_ALL=C R --no-save < ${htest}.R 2>&1 | tee > ${htest}.Rout
+   filter ${htest}.Rout.save > ${htest}.Rout.save_
+   filter ${htest}.Rout > ${htest}.Rout_
+   diff -u --ignore-all-space ${htest}.Rout.save_ ${htest}.Rout_
+   if [ ! $? ] ; then
+     echo "Test ${htest} failed"
+     exit 1
+   else
+     echo "Test ${htest} passed"
+   fi
+done
+rm -f $ADTTMP/*
+
+exit 0
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..e00cb1d
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,2 @@
+version=3
+http://cran.r-project.org/src/contrib/fields_([-\d.]*)\.tar\.gz

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