[med-svn] [r-cran-rncl] 01/10: Initial packaging for r-cran-rncl

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-cran-rncl.

commit 9303bf589fb4f4724a8b41a12b2e8ea9756fd49a
Author: Andreas Tille <tille at debian.org>
Date:   Tue Mar 22 13:19:46 2016 +0000

    Initial packaging for r-cran-rncl
---
 debian/changelog     |  5 +++++
 debian/compat        |  1 +
 debian/control       | 24 ++++++++++++++++++++++++
 debian/copyright     | 35 +++++++++++++++++++++++++++++++++++
 debian/rules         |  7 +++++++
 debian/source/format |  1 +
 debian/watch         |  3 +++
 7 files changed, 76 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..541c51a
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+r-cran-rncl (0.6.0-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #<bug>)
+
+ -- Andreas Tille <tille at debian.org>  Tue, 22 Mar 2016 12:05:59 +0100
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..fcc07db
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,24 @@
+Source: r-cran-rncl
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               cdbs,
+               r-base-dev,
+               r-cran-rcpp
+Standards-Version: 3.9.7
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-rncl/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-rncl/trunk/
+Homepage: https://cran.r-project.org/web/packages/rncl/
+
+Package: r-cran-rncl
+Architecture: any
+Depends: ${misc:Depends},
+         ${shlibs:Depends},
+         ${R:Depends}
+Description: GNU R interface to the Nexus Class Library
+ This R package provides an interface to the Nexus Class Library which
+ allows parsing of NEXUS, Newick and other phylogenetic tree file
+ formats. It provides elements of the file that can be used to build
+ phylogenetic objects such as ape's 'phylo' or phylobase's 'phylo4(d)'.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..b2357fa
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,35 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Contact: Francois Michonneau <francois.michonneau at gmail.com>
+Source: https://cran.r-project.org/web/packages/rncl/
+
+Files: *
+Copyright: 2013-2015 Francois Michonneau, Ben Bolker, Mark Holder, Paul Lewis, Brian O'Meara
+License: BSD-2-clause
+
+Files: debian/*
+Copyright: 2016 Andreas Tille <tille at debian.org>
+License: BSD-2-clause
+
+License: BSD-2-clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are
+ met:
+ .
+ 1. Redistributions of source code must retain the above copyright
+    notice, this list of conditions and the following disclaimer.
+ .
+ 2. Redistributions in binary form must reproduce the above copyright
+    notice, this list of conditions and the following disclaimer in the
+    documentation and/or other materials provided with the distribution.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS
+ IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
+ TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
+ PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+ HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED
+ TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
+ PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
+ LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
+ NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..79e5e44
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,7 @@
+#!/usr/bin/make -f
+
+include /usr/share/R/debian/r-cran.mk
+
+install/$(package)::
+	rm -rf debian/$(package)/usr/lib/R/site-library/$(cranName)/LICENSE
+	chmod 644 debian/$(package)/usr/lib/R/site-library/$(cranName)/nexusfiles/co1.nex
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..3a80307
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+http://cran.r-project.org/src/contrib/rncl_([-0-9\.]*).tar.gz
+

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