[med-svn] [gatb-core] 01/01: Really fix hdf5 includes

[Andreas Tille]

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tille pushed a commit to branch master
in repository gatb-core.

commit 109abd95519d80db9cb34ee1b2300ea459b76b7b
Author: Andreas Tille <tille at debian.org>
Date:   Thu Nov 30 18:36:14 2017 +0100

    Really fix hdf5 includes
---
 debian/patches/fix_hdf5_includes.patch | 22 +++++++++++-----------
 1 file changed, 11 insertions(+), 11 deletions(-)

diff --git a/debian/patches/fix_hdf5_includes.patch b/debian/patches/fix_hdf5_includes.patch
index 56110cd..86bc3d1 100644
--- a/debian/patches/fix_hdf5_includes.patch
+++ b/debian/patches/fix_hdf5_includes.patch
@@ -10,7 +10,7 @@ Description: Fix hdf5 includes.
  #include <algorithm>
  #include <iostream>
 -#include <hdf5/hdf5.h>
-+#include <hdf5.h>
++#include <hdf5/serial/hdf5.h>
  
  #include <gatb/system/api/Exception.hpp>
  #include <gatb/system/api/config.hpp>
@@ -21,7 +21,7 @@ Description: Fix hdf5 includes.
  
  #include <iostream>
 -#include <hdf5/hdf5.h>
-+#include <hdf5.h>
++#include <hdf5/serial/hdf5.h>
  
  #include <gatb/system/api/types.hpp>
  #include <gatb/tools/misc/api/Abundance.hpp>
@@ -32,7 +32,7 @@ Description: Fix hdf5 includes.
  #include <gatb/system/api/types.hpp>
  #include <gatb/tools/misc/api/Abundance.hpp>
 -#include <hdf5/hdf5.h>
-+#include <hdf5.h>
++#include <hdf5/serial/hdf5.h>
  
  /********************************************************************************/
  namespace gatb  {
@@ -43,7 +43,7 @@ Description: Fix hdf5 includes.
  #include <gatb/system/api/types.hpp>
  #include <gatb/tools/misc/api/Abundance.hpp>
 -#include <hdf5/hdf5.h>
-+#include <hdf5.h>
++#include <hdf5/serial/hdf5.h>
  
  /********************************************************************************/
  namespace gatb  {
@@ -54,7 +54,7 @@ Description: Fix hdf5 includes.
  #include <gatb/system/api/types.hpp>
  #include <gatb/tools/misc/api/Abundance.hpp>
 -#include <hdf5/hdf5.h>
-+#include <hdf5.h>
++#include <hdf5/serial/hdf5.h>
  
  extern const unsigned char revcomp_4NT[];
  extern const unsigned char comp_NT    [];
@@ -65,7 +65,7 @@ Description: Fix hdf5 includes.
  #include <gatb/system/api/types.hpp>
  #include <gatb/tools/misc/api/Abundance.hpp>
 -#include <hdf5/hdf5.h>
-+#include <hdf5.h>
++#include <hdf5/serial/hdf5.h>
  
  /********************************************************************************/
  namespace gatb  {
@@ -76,7 +76,7 @@ Description: Fix hdf5 includes.
  
  #include <sys/types.h>
 -#include <hdf5/hdf5.h>
-+#include <hdf5.h>
++#include <hdf5/serial/hdf5.h>
  
  /********************************************************************************/
  namespace gatb      {
@@ -87,7 +87,7 @@ Description: Fix hdf5 includes.
  #include <gatb/system/api/ISmartPointer.hpp>
  #include <gatb/tools/storage/impl/Storage.hpp>
 -#include <hdf5/hdf5.h>
-+#include <hdf5.h>
++#include <hdf5/serial/hdf5.h>
  
  /********************************************************************************/
  namespace gatb      {
@@ -98,7 +98,7 @@ Description: Fix hdf5 includes.
  #include <vector>
  #include <stdarg.h>
 -#include <hdf5/hdf5.h>
-+#include <hdf5.h>
++#include <hdf5/serial/hdf5.h>
  
  /********************************************************************************/
  namespace gatb      {
@@ -109,7 +109,7 @@ Description: Fix hdf5 includes.
  #include <vector>
  #include <stdarg.h>
 -#include <hdf5/hdf5.h>
-+#include <hdf5.h>
++#include <hdf5/serial/hdf5.h>
  
  /********************************************************************************/
  namespace gatb      {
@@ -120,7 +120,7 @@ Description: Fix hdf5 includes.
  #include <gatb/tools/storage/impl/CollectionHDF5Patch.hpp>
  #include <gatb/system/impl/System.hpp>
 -#include <hdf5/hdf5.h>
-+#include <hdf5.h>
++#include <hdf5/serial/hdf5.h>
  #include <sstream>
  
  /********************************************************************************/

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