[med-svn] [getdata] branch master created (now c006790)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository getdata.

        at  c006790   Fix cut-n-pasto

This branch includes the following new commits:

       new  cf00db7   Some bits towards a package for data management.
       new  55e25e5   Added KEGG in XML format.
       new  13467f7   Makes a buildable Debian package
       new  323be36   Added gene ontology, verbose option and Charles as co-author.
       new  6374a9d   Nicified changelogs.
       new  f9f8828   Added TrEMBL (protein sequence data maintained at the European Bioinformatics Institute) to the list of available databases.
       new  f6cc7ca   Working towards an automated indexing for Emboss.
       new  31ff2c0   Automated indexing should work for TrEMBL now.
       new  385dcb0   SWISS-PROT works.
       new  5fc3188   Fix of config display.
       new  1fc1991   Added Pfam A,B,C, no unpacking yet, though.
       new  b3992cf   * getData can now read its configuration from separate files.
       new  3988e04   Another way to get Jasper.
       new  9b4567a   * added --remove
       new  13de9cf   Added copyright info to Makfile.
       new  54c4457   * brining man page as txt file into SVN to be referenceable * far better descriptions
       new  923e104   Since $sharedWgetOptions has --no-host-directories, the script should not look in ftp.ebi.ac.uk.
       new  1114c46   Added Human RefSeq and ENSEMBL.
       new  55bac28   Changed default directory to `/var/lib/getdata'.
       new  dae2d56   Corrections to make the "confd" system work.
       new  6768336   Exploring the possibility of using makefiles:
       new  506c710   Correcting stupid mistakes.
       new  4d57f5a   Better have the output on STDOUT than STDERR…
       new  3695a29   Preliminary Rfam support.
       new  4aae0c7   Added limited support for mouse RefSeq, and a changelog.
       new  1281025   Factorised code and added mouse genome.
       new  c0e5c87   Added rat
       new  0a7d465   Added ITP number and VCS URLs.
       new  29f8650   getData.conf.d/mouse.getData.mk: upgraded to build NCBIM37.55.
       new  006c081   Added human genome build GRCh37.56.
       new  69bc220   Corrected a typo that prevented to download human RefSeq.
       new  2031578   Series of changes towards a first upload.
       new  2e4eb09   How to handle RefSeq downloads ?
       new  0837938   Native package.
       new  ec052ef   getData does not work out of the box for the moment.
       new  d99b484   Series of updates preparing for an upload.
       new  e8cbc6b   Removed templates and corrected bits.
       new  a9e87b0   Updated path to and treatment of DE405 data after an URL change.
       new  edf6ac1   Added gwascatalog to databases.
       new  8072420   Fixed Vcs fields, bumped standards-version
       new  7a11c04   Normalised with config-model-edit ; conforms with Policy 3.9.5.
       new  6e957c3   Using Debhelper 9.
       new  efd8061   Switch back to source format 1.0.
       new  cdb2ec8   Machine-readable Debian copyright file.
       new  7e0342b   Updated upstream version.
       new  c6d9d1b   Use canonical VCS URLs.
       new  3e1ec86   getdata (0.2-1) unstable; urgency=low
       new  426c9ad   Updated and extended download and processing of genomes
       new  6febea5   Commit uncommited files
       new  a5a3b37   Moved packaging from SVN to Git
       new  52dabc3   Use source/format = 3.0 (native) and use proper upstream tarball
       new  bfac933   New upstream version 0.2
       new  d4e5c10   Merge tag 'upstream/0.2'
       new  661425d   Re-add debian/ dir
       new  baca0db   Fix spelling
       new  2dc5f54   Team maintenance by Debian Med team
       new  b409aa9   replace cdbs by short dh, get-orig-source without parsing d/changelog
       new  a2fb7f3   source format (quilt)
       new  1ea588d   Do not use PWD
       new  31fda63   Add fake watch file
       new  b294757   Fix revision
       new  36b99b4   Standards-Version: 4.1.1
       new  c006790   Fix cut-n-pasto

The 63 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


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