[med-svn] [r-bioc-savr] 03/06: * New upstream version * Convert to dh-r * Generic BioConductor homepage

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-bioc-savr.

commit c37a6ded0cfe4e60f49a0718b3839ef4149719ee
Author: Andreas Tille <tille at debian.org>
Date:   Mon Nov 7 12:59:28 2016 +0000

      * New upstream version
      * Convert to dh-r
      * Generic BioConductor homepage
---
 debian/changelog |  8 ++++++++
 debian/control   | 13 +++++--------
 debian/copyright |  2 +-
 debian/rules     |  9 +++++----
 4 files changed, 19 insertions(+), 13 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 8bd9347..469ffbc 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,11 @@
+r-bioc-savr (1.12.0-1) unstable; urgency=medium
+
+  * New upstream version
+  * Convert to dh-r
+  * Generic BioConductor homepage
+
+ -- Andreas Tille <tille at debian.org>  Mon, 07 Nov 2016 13:50:46 +0100
+
 r-bioc-savr (1.10.0-1) unstable; urgency=low
 
   * Initial release (closes: #834720)
diff --git a/debian/control b/debian/control
index 624b893..74fda9c 100644
--- a/debian/control
+++ b/debian/control
@@ -4,7 +4,7 @@ Uploaders: Andreas Tille <tille at debian.org>
 Section: gnu-r
 Priority: optional
 Build-Depends: debhelper (>= 9),
-               cdbs,
+               dh-r,
                r-base-dev,
                r-cran-ggplot2,
                r-cran-reshape2,
@@ -14,17 +14,14 @@ Build-Depends: debhelper (>= 9),
 Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-savr/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-savr/trunk/
-Homepage: http://bioconductor.org/packages/release/bioc/html/savR.html
+Homepage: https://bioconductor.org/packages/savR/
 
 Package: r-bioc-savr
 Architecture: all
 Depends: ${R:Depends},
-         ${misc:Depends},
-         r-cran-ggplot2,
-         r-cran-reshape2,
-         r-cran-scales,
-         r-cran-gridextra,
-         r-cran-xml
+         ${misc:Depends}
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
 Description: GNU R parse and analyze Illumina SAV files
  This BioConductor module enables to parse Illumina Sequence Analysis
  Viewer (SAV) files, access data, and generate QC plots.
diff --git a/debian/copyright b/debian/copyright
index d6dd362..6bc31d3 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,7 +1,7 @@
 Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: savR
 Upstream-Contact: R. Brent Calder <brent.calder at einstein.yu.edu>
-Source: http://bioconductor.org/packages/release/bioc/html/savR.html
+Source: https://bioconductor.org/packages/savR/
 
 Files: *
 Copyright: 2013-2016 R. Brent Calder <brent.calder at einstein.yu.edu>
diff --git a/debian/rules b/debian/rules
index 661e46b..7ccf859 100755
--- a/debian/rules
+++ b/debian/rules
@@ -1,7 +1,8 @@
 #!/usr/bin/make -f
 
-debRreposname=bioc
-include /usr/share/R/debian/r-cran.mk
+%:
+	dh $@ --buildsystem R
 
-install/$(package)::
-	chmod -x $(debRlib)/$(cranNameOrig)/extdata/MiSeq/InterOp/*.bin
+override_dh_fixperms:
+	dh_fixperms
+	find debian -name "*.bin" -exec chmod -x \{\} \;

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