[med-svn] [gmap] 02/05: Updated version 2017-09-30 from 'upstream/2017-09-30'

[Alex Mestiashvili]

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malex-guest pushed a commit to branch master
in repository gmap.

commit 409aacee6dbd5a3988ce14e0b7057f1d0e8ab89b
Merge: 97539d2 b588a61
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Mon Oct 2 09:59:41 2017 +0200

    Updated version 2017-09-30 from 'upstream/2017-09-30'
    
    with Debian dir 7c250e9797d2f6319ab5e2c1394718d2fcaa2f2d

 ChangeLog           |  32 +++++++
 VERSION             |   2 +-
 configure           |  24 ++---
 src/Makefile.am     |   4 +-
 src/Makefile.in     |  30 ++++---
 src/chimera.c       |   4 +-
 src/gmap.c          |  41 ++++++---
 src/gsnap.c         |   4 +-
 src/pair.c          | 150 +++++++++++++++++++++++++------
 src/pair.h          |   7 +-
 src/stage3.c        |  44 ++++++---
 src/translation.c   |  54 +++++++++--
 src/uinttableuint.c | 252 ++++++++++++++++++++++++++++++++++++++++++++++++++++
 src/uinttableuint.h |  33 +++++++
 src/uniqscan.c      |   4 +-
 15 files changed, 597 insertions(+), 88 deletions(-)

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