[med-svn] [seq-gen] 02/06: Updated version 1.3.4 from 'upstream/1.3.4'

[Alex Mestiashvili]

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malex-guest pushed a commit to branch master
in repository seq-gen.

commit f76a13c6d2ca04b4e114361ed78b67e6dbd5dc0d
Merge: 4512c8b 95dced2
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Mon Oct 2 16:23:51 2017 +0200

    Updated version 1.3.4 from 'upstream/1.3.4'
    
    with Debian dir acd54d4a0d614dbab23499340163e5d13b855b90

 .gitignore                        |   5 +
 documentation/Seq-Gen.Manual.html |  55 +++++++++-
 examples/seqs+trees.phy           |   7 ++
 source/aamodels.c                 |   4 +-
 source/aamodels.h                 |   4 +-
 source/eigen.c                    |   4 +-
 source/eigen.h                    |   4 +-
 source/evolve.c                   |   4 +-
 source/evolve.h                   |   4 +-
 source/gamma.c                    |   4 +-
 source/gamma.h                    |   4 +-
 source/global.c                   |   9 +-
 source/global.h                   |   4 +-
 source/model.c                    |   4 +-
 source/model.h                    |   4 +-
 source/nucmodels.c                |   4 +-
 source/nucmodels.h                |   4 +-
 source/progress.c                 |   4 +-
 source/progress.h                 |   4 +-
 source/seq-gen.c                  | 213 +++++++++++++++++++++-----------------
 source/tree.h                     |   4 +-
 source/treefile.c                 |  14 +--
 source/treefile.h                 |   4 +-
 source/twister.c                  |   4 +-
 source/twister.h                  |   4 +-
 25 files changed, 231 insertions(+), 148 deletions(-)

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