[med-svn] [r-cran-phylobase] 01/06: Inject r-cran-phylobase

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository r-cran-phylobase.

commit 7f2a735eeb1cd75155eb3ef18e6e7ed6f94bbe1c
Author: Andreas Tille <tille at debian.org>
Date:   Wed Mar 23 10:11:39 2016 +0000

    Inject r-cran-phylobase
---
 debian/README.test         |  9 +++++++++
 debian/changelog           |  6 ++++++
 debian/compat              |  1 +
 debian/control             | 31 +++++++++++++++++++++++++++++++
 debian/copyright           | 15 +++++++++++++++
 debian/docs                |  3 +++
 debian/rules               |  3 +++
 debian/source/format       |  1 +
 debian/tests/control       |  3 +++
 debian/tests/run-unit-test | 12 ++++++++++++
 debian/watch               |  3 +++
 11 files changed, 87 insertions(+)

diff --git a/debian/README.test b/debian/README.test
new file mode 100644
index 0000000..4fe93f7
--- /dev/null
+++ b/debian/README.test
@@ -0,0 +1,9 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+
+cd tests
+LC_ALL=C R --no-save < test-all.R
+
+in order to confirm its integrity.
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..11d0954
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,6 @@
+r-cran-phylobase (0.8.2-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #<bug>)
+  TODO: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-rnexml/trunk/
+
+ -- Andreas Tille <tille at debian.org>  Tue, 22 Mar 2016 12:05:59 +0100
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..fefb5a0
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,31 @@
+Source: r-cran-phylobase
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               cdbs,
+               r-base-dev
+               r-cran-ape,
+               r-cran-ade4,
+               r-cran-rcpp,
+               r-cran-rncl,
+               r-cran-rnexml
+Standards-Version: 3.9.7
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-phylobase/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-phylobase/trunk/
+Homepage: https://cran.r-project.org/web/packages/phylobase/
+
+Package: r-cran-phylobase
+Architecture: any
+Depends: ${misc:Depends},
+         ${shlibs:Depends},
+         ${R:Depends},
+         r-cran-ape,
+         r-cran-ade4,
+         r-cran-rncl,
+         r-cran-rnexml
+Description: GNU R base package for phylogenetic structures and comparative data
+ This R package provides a base S4 class for comparative methods,
+ incorporating one or more trees and trait data as these are used in
+ other packages dealing with phylogenetic structures and comparative data.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..bd164b5
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,15 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Contact: Francois Michonneau <francois.michonneau at gmail.com>
+Source: https://cran.r-project.org/web/packages/phylobase/
+
+Files: *
+Copyright: 2013-2015 Ben Bolker, Marguerite Butler, Peter Cowan,
+                     Damien de Vienne, Dirk Eddelbuettel, Mark Holder,
+                     Thibaut Jombart, Steve Kembel, Francois Michonneau,
+                     David Orme, Brian O'Meara, Emmanuel Paradis,
+                     Jim Regetz, Derrick Zwickl
+License: GPL-2+
+
+Files: debian/*
+Copyright: 2016 Andreas Tille <tille at debian.org>
+License: GPL-2+
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..960011c
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1,3 @@
+tests
+debian/README.test
+debian/tests/run-unit-test
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..2fbba2d
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,3 @@
+#!/usr/bin/make -f
+
+include /usr/share/R/debian/r-cran.mk
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/tests/control b/debian/tests/control
new file mode 100644
index 0000000..b044b0c
--- /dev/null
+++ b/debian/tests/control
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @, r-cran-testthat
+Restrictions: allow-stderr
diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test
new file mode 100644
index 0000000..99bb957
--- /dev/null
+++ b/debian/tests/run-unit-test
@@ -0,0 +1,12 @@
+#!/bin/sh -e
+
+oname=phylobase
+pkg=r-cran-`echo $oname | tr [A-Z] [a-z]`
+
+if [ "$ADTTMP" = "" ] ; then
+  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+fi
+cd $ADTTMP
+cp -a /usr/share/doc/${pkg}/tests/* $ADTTMP
+LC_ALL=C R --no-save < test-all.R
+rm -fr $ADTTMP/*
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..b077d57
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+http://cran.r-project.org/src/contrib/phylobase_([-0-9\.]*).tar.gz
+

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-cran-phylobase.git