[med-svn] [r-cran-adephylo] 10/11: Updated version 1.1-10 from 'upstream/1.1-10'

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository r-cran-adephylo.

commit 8ed7d55b046950226a23525e5344dd6060f70eba
Merge: 8613adf 8182c31
Author: Andreas Tille <tille at debian.org>
Date:   Mon Oct 2 23:56:47 2017 +0200

    Updated version 1.1-10 from 'upstream/1.1-10'
    
    with Debian dir d77a9cb3592f1967bfc1995e73750085df51d6fc

 ChangeLog                              |  122 ++++
 DESCRIPTION                            |   20 +
 MD5                                    |   83 +++
 NAMESPACE                              |   60 ++
 R/abouheif.R                           |  147 ++++
 R/adephylo-package.R                   |  619 +++++++++++++++++
 R/bullseye.R                           |  207 ++++++
 R/dibas.R                              |  605 +++++++++++++++++
 R/distances.R                          |  327 +++++++++
 R/moran.R                              |   96 +++
 R/orthobasis.R                         |  152 +++++
 R/orthogram.R                          |  332 +++++++++
 R/partition.R                          |  232 +++++++
 R/ppca.R                               |  699 +++++++++++++++++++
 R/proximities.R                        |  183 +++++
 R/table.phylo4d.R                      |  413 ++++++++++++
 R/utils.R                              |  288 ++++++++
 R/zzz.R                                |    3 +
 build/vignette.rds                     |  Bin 0 -> 243 bytes
 data/carni19.RData                     |  Bin 0 -> 651 bytes
 data/carni70.RData                     |  Bin 0 -> 1868 bytes
 data/lizards.RData                     |  Bin 0 -> 883 bytes
 data/maples.RData                      |  Bin 0 -> 2030 bytes
 data/mjrochet.RData                    |  Bin 0 -> 2384 bytes
 data/palm.RData                        |  Bin 0 -> 3447 bytes
 data/procella.RData                    |  Bin 0 -> 1156 bytes
 data/tithonia.RData                    |  Bin 0 -> 913 bytes
 data/ungulates.RData                   |  Bin 0 -> 724 bytes
 inst/CITATION                          |   13 +
 inst/doc/adephylo.R                    |  283 ++++++++
 inst/doc/adephylo.Rnw                  |  665 ++++++++++++++++++
 inst/doc/adephylo.pdf                  |  Bin 0 -> 231481 bytes
 man/abouheif.Rd                        |  115 ++++
 man/adephylo-package.Rd                |  132 ++++
 man/bullseye.Rd                        |   97 +++
 man/carni19.Rd                         |   37 +
 man/carni70.Rd                         |   55 ++
 man/dibas.Rd                           |  149 +++++
 man/distRoot.Rd                        |   74 ++
 man/distTips.Rd                        |  100 +++
 man/listDD.Rd                          |   46 ++
 man/listTips.Rd                        |   42 ++
 man/lizards.Rd                         |   75 +++
 man/maples.Rd                          |   56 ++
 man/miscUtils.Rd                       |   50 ++
 man/mjrochet.Rd                        |   54 ++
 man/moranIdx.Rd                        |   76 +++
 man/orthobasis.Rd                      |  125 ++++
 man/orthogram.Rd                       |  154 +++++
 man/palm.Rd                            |   59 ++
 man/ppca.Rd                            |  265 ++++++++
 man/procella.Rd                        |   51 ++
 man/proxTips.Rd                        |  148 ++++
 man/sp.tips.Rd                         |   68 ++
 man/table.phylo4d.Rd                   |  155 +++++
 man/tithonia.Rd                        |   61 ++
 man/treePart.Rd                        |   67 ++
 man/ungulates.Rd                       |   58 ++
 src/adesub.c                           | 1152 ++++++++++++++++++++++++++++++++
 src/adesub.h                           |   45 ++
 src/distPhylo.c                        |  368 ++++++++++
 src/misc.c                             |   29 +
 src/phylog.c                           |  478 +++++++++++++
 src/sptips.c                           |  482 +++++++++++++
 src/sptips.h                           |   17 +
 vignettes/adephylo.Rnw                 |  665 ++++++++++++++++++
 vignettes/figs/adephylo-012.pdf        |  Bin 0 -> 7980 bytes
 vignettes/figs/adephylo-012.png        |  Bin 0 -> 4569 bytes
 vignettes/figs/adephylo-016.pdf        |  Bin 0 -> 4262 bytes
 vignettes/figs/adephylo-017.pdf        |  293 ++++++++
 vignettes/figs/adephylo-017.png        |  Bin 0 -> 2981 bytes
 vignettes/figs/adephylo-018.pdf        |  Bin 0 -> 5319 bytes
 vignettes/figs/adephylo-aboutest.pdf   |  Bin 0 -> 4697 bytes
 vignettes/figs/adephylo-figFourBas.pdf |  Bin 0 -> 11018 bytes
 vignettes/figs/adephylo-lm1.pdf        |  Bin 0 -> 4918 bytes
 vignettes/figs/adephylo-loadings.pdf   |  Bin 0 -> 5742 bytes
 vignettes/figs/adephylo-orthobas1.pdf  |  Bin 0 -> 6514 bytes
 vignettes/figs/adephylo-pca1.pdf       |  Bin 0 -> 4600 bytes
 vignettes/figs/adephylo-pca2.pdf       |  Bin 0 -> 6513 bytes
 vignettes/figs/adephylo-phylo4d.pdf    |  Bin 0 -> 6908 bytes
 vignettes/figs/adephylo-phylo4d.png    |  Bin 0 -> 6533 bytes
 vignettes/figs/adephylo-resid.pdf      |  Bin 0 -> 5900 bytes
 vignettes/figs/adephylo-treePart.pdf   |  139 ++++
 vignettes/figs/adephylo-treePart.png   |  Bin 0 -> 1786 bytes
 84 files changed, 11586 insertions(+)

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