[med-svn] [indelible] 02/03: Fix some spelling issues
Andreas Tille
tille at debian.org
Tue Oct 3 06:25:30 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository indelible.
commit c27931d1890c73782aa4a491723a27de630c305f
Author: Andreas Tille <tille at debian.org>
Date: Tue Oct 3 08:19:32 2017 +0200
Fix some spelling issues
---
debian/changelog | 1 +
debian/patches/0006-spelling.patch | 57 ++++++++++++++++++++++++++++++++++++++
debian/patches/series | 1 +
3 files changed, 59 insertions(+)
diff --git a/debian/changelog b/debian/changelog
index f03becd..ccf0f7f 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -5,6 +5,7 @@ indelible (1.03-3) UNRELEASED; urgency=medium
* Normalise Vcs fields using cme fix dpkg-control
* Add fake watch file
* debhelper 10
+ * Fix some spelling issues
[ Steffen Moeller ]
* Added reference to OMICtools
diff --git a/debian/patches/0006-spelling.patch b/debian/patches/0006-spelling.patch
new file mode 100644
index 0000000..848c274
--- /dev/null
+++ b/debian/patches/0006-spelling.patch
@@ -0,0 +1,57 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Tue, 03 Oct 2017 08:18:07 +0200
+Description: Fix some spelling issues
+
+--- a/src/control.cpp
++++ b/src/control.cpp
+@@ -1947,7 +1947,7 @@ int dealwithsites(vector<string> &block)
+ }
+
+ if(a[0]!='C' || a[1]!='[' || a[a.size()-1]!=']')
+- {controlerrorprint2("[SITES]", name, a, "Only one statement after the sites class name means you are specifiying\na codon sites class and you must use the following notation:\nC[mymodelname1,mymodelname2,mymodelname3] or\nC[mybranchclass1,mybranchclass2,mybranchclass3]",""); {if(breakonerror) return -1;} }
++ {controlerrorprint2("[SITES]", name, a, "Only one statement after the sites class name means you are specifying\na codon sites class and you must use the following notation:\nC[mymodelname1,mymodelname2,mymodelname3] or\nC[mybranchclass1,mybranchclass2,mybranchclass3]",""); {if(breakonerror) return -1;} }
+
+
+
+@@ -2107,7 +2107,7 @@ int dealwithbranches(vector<string> &blo
+ }
+
+ if(mybracketleft!=mybracketright)
+- {treeerror=true; controlerrorprint2("[BRANCHES]", name, "", "Number of parantheses in guide tree do not match.",""); {if(breakonerror) return -1;} }
++ {treeerror=true; controlerrorprint2("[BRANCHES]", name, "", "Number of parentheses in guide tree do not match.",""); {if(breakonerror) return -1;} }
+
+ if(mybracketleft==0)
+ {treeerror=true; controlerrorprint2("[BRANCHES]", name,"", "Branch class guide tree must contain as least one set of parentheses.",""); {if(breakonerror) return -1;} }
+@@ -2904,10 +2904,10 @@ int dealwithtrees(vector<string> &block)
+
+ if(mybracketleft!=mybracketright)
+ {cout<<rawvalue<<endl<<mybracketleft<<" "<<mybracketright<<endl;
+- treeerror=true; controlerrorprint2("[TREE]", name, commands.at(lasttest), "Number of parantheses in guide tree do not match.",""); {if(breakonerror) return -1;} }
++ treeerror=true; controlerrorprint2("[TREE]", name, commands.at(lasttest), "Number of parentheses in guide tree do not match.",""); {if(breakonerror) return -1;} }
+
+ if(mybracketleft==0)
+- {treeerror=true; controlerrorprint2("[TREE]", name, commands.at(lasttest), "Guide tree must contain as least one set of parentheses.",""); {if(breakonerror) return -1;} }
++ {treeerror=true; controlerrorprint2("[TREE]", name, commands.at(lasttest), "Guide tree mu st contain as least one set of parentheses.",""); {if(breakonerror) return -1;} }
+
+ c1='Q'; c2='Q';
+ int taxacount=0, coloncount=0, intbranch=0, extbranch=0;
+@@ -2945,7 +2945,7 @@ int dealwithtrees(vector<string> &block)
+
+ if(c2==')' && c1!=';' && lengthon==0)
+ {
+- if(c1!=':') {treeerror=true; controlerrorprint2("[TREE]", name, commands.at(lasttest), "There is no branch length after a right paranthesis in the tree.\nIt happened here \""+lasterror+"\"",""); {if(breakonerror) return -1;} }
++ if(c1!=':') {treeerror=true; controlerrorprint2("[TREE]", name, commands.at(lasttest), "There is no branch length after a right parenthesis in the tree.\nIt happened here \""+lasterror+"\"",""); {if(breakonerror) return -1;} }
+ else {lengthon=1; currentlength="";}
+ }
+
+--- a/indelible.1
++++ b/indelible.1
+@@ -7,7 +7,7 @@ indelible \- powerful and flexible simul
+ No options can be passed via the commandline.
+ .SH DESCRIPTION
+ .TP
+-\fBindelible\fR can simulate evolution of multi-partitioned nucleotide, amino-acid, or codon data sets through the processes of insertion, deletion, and substitution in continous time. All common evolutionary models are supported.
++\fBindelible\fR can simulate evolution of multi-partitioned nucleotide, amino-acid, or codon data sets through the processes of insertion, deletion, and substitution in continuous time. All common evolutionary models are supported.
+ .TP
+ The full documentation for \fBindelible\fR is available under \fI/usr/share/doc/indelible/help/index.html\fR.
+ .SH CONFIGURATION
diff --git a/debian/patches/series b/debian/patches/series
index a60b50c..242ae70 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -3,3 +3,4 @@
0003-added-manpage.patch
0004-added-auto-tools-build-system.patch
0005-remove-unnecessary-whitespace-from-the-end-of-sequen.patch
+0006-spelling.patch
--
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