[med-svn] [r-bioc-ensembldb] 01/10: Inject r-bioc-ensembldb

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-bioc-ensembldb.

commit 2be211646488f0697c69593a0272658346171cfb
Author: Andreas Tille <tille at debian.org>
Date:   Wed May 11 15:03:23 2016 +0000

    Inject r-bioc-ensembldb
---
 debian/changelog     |  7 +++++++
 debian/compat        |  1 +
 debian/control       | 29 +++++++++++++++++++++++++++++
 debian/copyright     | 17 +++++++++++++++++
 debian/rules         |  4 ++++
 debian/source/format |  1 +
 debian/watch         |  3 +++
 7 files changed, 62 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..cb8566f
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,7 @@
+r-bioc-ensembldb (1.4.0-1) UNRELEASED; urgency=low
+
+  * Initial release (closes: #???)
+    TODO:
+        svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-annotationhub/trunk/
+
+ -- Andreas Tille <tille at debian.org>  Wed, 11 May 2016 15:29:00 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..72b255a
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,29 @@
+Source: r-bioc-ensembldb
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               cdbs,
+               r-base-dev,
+               r-bioc-genomicfeatures
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-ensembldb/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-ensembldb/trunk/
+Homepage: http://bioconductor.org/packages/release/bioc/html/ensembldb.html
+
+Package: r-bioc-ensembldb
+Architecture: all
+Depends: ${R:Depends},
+         ${misc:Depends},
+         r-bioc-genomicfeatures
+Description: GNU R utilities to create and use an Ensembl based annotation database
+ The package provides functions to create and use transcript centric
+ annotation databases/packages. The annotation for the databases are
+ directly fetched from Ensembl using their Perl API. The functionality
+ and data is similar to that of the TxDb packages from the
+ GenomicFeatures package, but, in addition to retrieve all
+ gene/transcript models and annotations from the database, the ensembldb
+ package provides also a filter framework allowing to retrieve
+ annotations for specific entries like genes encoded on a chromosome
+ region or transcript models of lincRNA genes.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..c2eb96e
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,17 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: ensembldb
+Upstream-Contact: Johannes Rainer <johannes.rainer at eurac.edu> 
+Source: http://bioconductor.org/packages/release/bioc/html/ensembldb.html
+
+Files: *
+Copyright: 2006-2016 Johannes Rainer <johannes.rainer at eurac.edu>,
+                     Tim Triche <tim.triche at usc.edu> 
+License: LGPL-2.1+
+
+Files: debian/*
+Copyright: 2016 Andreas Tille <tille at debian.org>
+License: LGPL-2.1+
+
+License: LGPL-2.1+
+ On Debian GNU/Linux system you can find the complete text of the
+ LGPL license in '/usr/share/common-licenses/LGPL-2.1'.
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..aeb12b3
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,4 @@
+#!/usr/bin/make -f
+
+debRreposname=bioc
+include /usr/share/R/debian/r-cran.mk
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..7bc8fdc
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+opts=downloadurlmangle=s?^(.*)\.\.?http:$1packages/release/bioc? \
+ http://www.bioconductor.org/packages/release/bioc/html/ensembldb.html .*/ensembldb_([\d\.]+)\.tar\.gz

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-ensembldb.git