[med-svn] [fast5] branch master updated (bf13df6 -> ad49186)
Afif Elghraoui
afif at moszumanska.debian.org
Sat Oct 7 04:08:38 UTC 2017
This is an automated email from the git hooks/post-receive script.
afif pushed a change to branch master
in repository fast5.
from bf13df6 releasing package fast5 version 0.6.2-7
new 6198cc7 New upstream version 0.6.3
new 52f1843 Merge tag 'upstream/0.6.3'
new 0fdfd61 Vastly simplified packaging after upstream patches accepted
new 79b8798 Don't hard-code hdf5-serial
new b7ed7f7 Fix installation of examples
new fbc276d Fix source build in autopkgtest
new ad49186 Update changelog
The 7 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.gitignore | 2 +
.travis.yml | 2 +-
Doxyfile | 2479 ++++++++++++++++++++
README.org | 2 +-
debian/changelog | 9 +
debian/libfast5-dev.examples | 3 +-
debian/libfast5-dev.install | 8 +-
debian/patches/functional.patch | 14 -
debian/patches/hdf5include.patch | 15 -
debian/patches/rpath.patch | 8 +-
debian/patches/series | 3 +-
debian/patches/vpath.patch | 21 +
debian/rules | 26 +-
debian/tests/control | 4 +-
{src => include}/fast5.hpp | 24 +-
{src => include/fast5}/Bit_Packer.hpp | 0
{src => include/fast5}/Huffman_Packer.hpp | 0
{src => include/fast5}/cwmap.fast5_ed_len_1.inl | 0
{src => include/fast5}/cwmap.fast5_ed_skip_1.inl | 0
{src => include/fast5}/cwmap.fast5_ev_move_1.inl | 0
.../fast5}/cwmap.fast5_ev_rel_skip_1.inl | 0
{src => include/fast5}/cwmap.fast5_fq_bp_1.inl | 0
{src => include/fast5}/cwmap.fast5_fq_qv_1.inl | 0
{src => include/fast5}/cwmap.fast5_rw_1.inl | 0
{src => include/fast5}/fast5_version.hpp | 0
{src => include/fast5}/hdf5_tools.hpp | 1449 ++++++++----
{src => include/fast5}/logger.hpp | 1 +
python/bin/f5ls | 4 +-
python/setup.py | 5 +-
src/File_Packer.hpp | 3 +-
src/Makefile | 5 +-
src/f5-mod.cpp | 2 +-
src/f5dump.cpp | 2 +-
src/f5ls-full.cpp | 2 +-
src/f5ls.cpp | 2 +-
src/f5pack.cpp | 3 +-
src/hdf5-mod.cpp | 2 +-
src/huffman-decode.cpp | 4 +-
src/huffman-encode.cpp | 4 +-
39 files changed, 3539 insertions(+), 569 deletions(-)
create mode 100644 Doxyfile
delete mode 100644 debian/patches/functional.patch
delete mode 100644 debian/patches/hdf5include.patch
create mode 100644 debian/patches/vpath.patch
rename {src => include}/fast5.hpp (99%)
rename {src => include/fast5}/Bit_Packer.hpp (100%)
rename {src => include/fast5}/Huffman_Packer.hpp (100%)
rename {src => include/fast5}/cwmap.fast5_ed_len_1.inl (100%)
rename {src => include/fast5}/cwmap.fast5_ed_skip_1.inl (100%)
rename {src => include/fast5}/cwmap.fast5_ev_move_1.inl (100%)
rename {src => include/fast5}/cwmap.fast5_ev_rel_skip_1.inl (100%)
rename {src => include/fast5}/cwmap.fast5_fq_bp_1.inl (100%)
rename {src => include/fast5}/cwmap.fast5_fq_qv_1.inl (100%)
rename {src => include/fast5}/cwmap.fast5_rw_1.inl (100%)
rename {src => include/fast5}/fast5_version.hpp (100%)
rename {src => include/fast5}/hdf5_tools.hpp (55%)
rename {src => include/fast5}/logger.hpp (99%)
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