[med-svn] [fast5] 02/07: Merge tag 'upstream/0.6.3'

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository fast5.

commit 52f1843ad01c80e44fc1675f1d171dd80e77a3e8
Merge: bf13df6 6198cc7
Author: Afif Elghraoui <afif at debian.org>
Date:   Fri Oct 6 22:48:35 2017 -0400

    Merge tag 'upstream/0.6.3'
    
    Upstream version 0.6.3

 .gitignore                                         |    2 +
 .travis.yml                                        |    2 +-
 Doxyfile                                           | 2479 ++++++++++++++++++++
 README.org                                         |    2 +-
 {src => include}/fast5.hpp                         |   24 +-
 {src => include/fast5}/Bit_Packer.hpp              |    0
 {src => include/fast5}/Huffman_Packer.hpp          |    0
 {src => include/fast5}/cwmap.fast5_ed_len_1.inl    |    0
 {src => include/fast5}/cwmap.fast5_ed_skip_1.inl   |    0
 {src => include/fast5}/cwmap.fast5_ev_move_1.inl   |    0
 .../fast5}/cwmap.fast5_ev_rel_skip_1.inl           |    0
 {src => include/fast5}/cwmap.fast5_fq_bp_1.inl     |    0
 {src => include/fast5}/cwmap.fast5_fq_qv_1.inl     |    0
 {src => include/fast5}/cwmap.fast5_rw_1.inl        |    0
 {src => include/fast5}/fast5_version.hpp           |    0
 {src => include/fast5}/hdf5_tools.hpp              | 1449 ++++++++----
 {src => include/fast5}/logger.hpp                  |    1 +
 python/bin/f5ls                                    |    4 +-
 python/setup.py                                    |    5 +-
 src/File_Packer.hpp                                |    3 +-
 src/Makefile                                       |    5 +-
 src/f5-mod.cpp                                     |    2 +-
 src/f5dump.cpp                                     |    2 +-
 src/f5ls-full.cpp                                  |    2 +-
 src/f5ls.cpp                                       |    2 +-
 src/f5pack.cpp                                     |    3 +-
 src/hdf5-mod.cpp                                   |    2 +-
 src/huffman-decode.cpp                             |    4 +-
 src/huffman-encode.cpp                             |    4 +-
 29 files changed, 3491 insertions(+), 506 deletions(-)

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