[med-svn] [r-cran-epi] branch master updated (45e77d3 -> 669bad1)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository r-cran-epi.

      from  45e77d3   Moved packaging from SVN to Git
       new  467a8b3   New upstream version 2.19
       new  e177f0a   Updated version 2.19 from 'upstream/2.19'
       new  ffe158b   New upstream version
       new  355421e   Standards-Version: 4.1.1
       new  e616b6d   debhelper 10
       new  c3416a3   Build-Depends: r-cran-zoo
       new  669bad1   Add debian/README.source to document binary data files

The 7 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CHANGES                |  89 ++++++-
 DESCRIPTION            |  18 +-
 MD5                    | 101 ++++----
 NAMESPACE              |  13 +-
 R/LCa.fit.R            |  35 ++-
 R/Ns.r                 |   2 +-
 R/addCov.Lexis.R       | 113 +++++++++
 R/ci.lin.R             |  53 +++-
 R/clogistic.R          |   5 +-
 R/crr.Lexis.r          |  18 +-
 R/erl.R                |  21 +-
 R/lexis.R              |   3 +
 R/lls.R                |  19 +-
 R/mcutLexis.R          | 151 ++++++++++++
 R/plotCIF.R            |  54 +++++
 R/stackedCIF.R         |  72 ++++++
 R/xgrep.R              |   3 +
 R/zzz.R                |   4 -
 build/vignette.rds     | Bin 276 -> 309 bytes
 data/DMepi.rda         | Bin 0 -> 76086 bytes
 debian/README.source   | 101 ++++++++
 debian/changelog       |   7 +-
 debian/compat          |   2 +-
 debian/control         |   7 +-
 inst/doc/Follow-up.pdf | Bin 206532 -> 206908 bytes
 inst/doc/index.html    |   3 +
 inst/doc/simLexis.R    |  40 +--
 inst/doc/simLexis.pdf  | Bin 352900 -> 358803 bytes
 inst/doc/simLexis.rnw  |  26 +-
 inst/doc/yll.R         | 206 ++++++++++++++++
 inst/doc/yll.pdf       | Bin 0 -> 291815 bytes
 inst/doc/yll.rnw       | 641 +++++++++++++++++++++++++++++++++++++++++++++++++
 man/DMepi.Rd           |  41 ++++
 man/Icens.Rd           |   2 +-
 man/LCa.fit.Rd         |  38 +--
 man/Lexis.Rd           |   2 +
 man/Ns.Rd              |   2 +-
 man/addCov.Lexis.Rd    | 133 ++++++++++
 man/cal.yr.Rd          |   2 +-
 man/ci.cum.Rd          |  21 +-
 man/ci.lin.Rd          |  42 +++-
 man/cutLexis.Rd        |  11 +-
 man/erl.Rd             |  30 +--
 man/fit.mult.Rd        |   2 +-
 man/foreign.Lexis.Rd   |   2 +-
 man/gen.exp.Rd         |  22 +-
 man/lgrep.Rd           |  39 +++
 man/mcutLexis.Rd       |  96 ++++++++
 man/ncut.Rd            |   2 +-
 man/nice.Rd            |   2 +-
 man/plotCIF.Rd         | 122 ++++++++++
 man/plotEst.Rd         |   2 +-
 man/splitLexis.Rd      |   6 +-
 man/stack.Lexis.Rd     |   2 +-
 man/summary.Lexis.rd   |   4 +-
 man/transform.Lexis.Rd |  12 +-
 src/chinv2.c           |   4 +-
 src/cholesky2.c        |   4 +-
 src/chsolve2.c         |   4 +-
 src/clogit.c           |   6 +-
 src/init.c             |  18 ++
 vignettes/index.html   |   3 +
 vignettes/simLexis.rnw |  26 +-
 vignettes/yll.rnw      | 641 +++++++++++++++++++++++++++++++++++++++++++++++++
 64 files changed, 2919 insertions(+), 231 deletions(-)
 create mode 100644 R/addCov.Lexis.R
 create mode 100644 R/mcutLexis.R
 create mode 100644 R/plotCIF.R
 create mode 100644 R/stackedCIF.R
 create mode 100644 R/xgrep.R
 delete mode 100644 R/zzz.R
 create mode 100644 data/DMepi.rda
 create mode 100644 debian/README.source
 create mode 100644 inst/doc/yll.R
 create mode 100644 inst/doc/yll.pdf
 create mode 100644 inst/doc/yll.rnw
 create mode 100644 man/DMepi.Rd
 create mode 100644 man/addCov.Lexis.Rd
 create mode 100644 man/lgrep.Rd
 create mode 100644 man/mcutLexis.Rd
 create mode 100644 man/plotCIF.Rd
 create mode 100644 src/init.c
 create mode 100644 vignettes/yll.rnw

-- 
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