[med-svn] [r-cran-epi] 02/07: Updated version 2.19 from 'upstream/2.19'

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-cran-epi.

commit e177f0aebaecebec7a36ef13ea555681cf53052e
Merge: 45e77d3 467a8b3
Author: Andreas Tille <tille at debian.org>
Date:   Mon Oct 9 16:43:02 2017 +0200

    Updated version 2.19 from 'upstream/2.19'
    
    with Debian dir 158e68e1b0777c0e1a11af2922e94b629038c622

 CHANGES                |  89 ++++++-
 DESCRIPTION            |  18 +-
 MD5                    | 101 ++++----
 NAMESPACE              |  13 +-
 R/LCa.fit.R            |  35 ++-
 R/Ns.r                 |   2 +-
 R/addCov.Lexis.R       | 113 +++++++++
 R/ci.lin.R             |  53 +++-
 R/clogistic.R          |   5 +-
 R/crr.Lexis.r          |  18 +-
 R/erl.R                |  21 +-
 R/lexis.R              |   3 +
 R/lls.R                |  19 +-
 R/mcutLexis.R          | 151 ++++++++++++
 R/plotCIF.R            |  54 +++++
 R/stackedCIF.R         |  72 ++++++
 R/xgrep.R              |   3 +
 R/zzz.R                |   4 -
 build/vignette.rds     | Bin 276 -> 309 bytes
 data/DMepi.rda         | Bin 0 -> 76086 bytes
 inst/doc/Follow-up.pdf | Bin 206532 -> 206908 bytes
 inst/doc/index.html    |   3 +
 inst/doc/simLexis.R    |  40 +--
 inst/doc/simLexis.pdf  | Bin 352900 -> 358803 bytes
 inst/doc/simLexis.rnw  |  26 +-
 inst/doc/yll.R         | 206 ++++++++++++++++
 inst/doc/yll.pdf       | Bin 0 -> 291815 bytes
 inst/doc/yll.rnw       | 641 +++++++++++++++++++++++++++++++++++++++++++++++++
 man/DMepi.Rd           |  41 ++++
 man/Icens.Rd           |   2 +-
 man/LCa.fit.Rd         |  38 +--
 man/Lexis.Rd           |   2 +
 man/Ns.Rd              |   2 +-
 man/addCov.Lexis.Rd    | 133 ++++++++++
 man/cal.yr.Rd          |   2 +-
 man/ci.cum.Rd          |  21 +-
 man/ci.lin.Rd          |  42 +++-
 man/cutLexis.Rd        |  11 +-
 man/erl.Rd             |  30 +--
 man/fit.mult.Rd        |   2 +-
 man/foreign.Lexis.Rd   |   2 +-
 man/gen.exp.Rd         |  22 +-
 man/lgrep.Rd           |  39 +++
 man/mcutLexis.Rd       |  96 ++++++++
 man/ncut.Rd            |   2 +-
 man/nice.Rd            |   2 +-
 man/plotCIF.Rd         | 122 ++++++++++
 man/plotEst.Rd         |   2 +-
 man/splitLexis.Rd      |   6 +-
 man/stack.Lexis.Rd     |   2 +-
 man/summary.Lexis.rd   |   4 +-
 man/transform.Lexis.Rd |  12 +-
 src/chinv2.c           |   4 +-
 src/cholesky2.c        |   4 +-
 src/chsolve2.c         |   4 +-
 src/clogit.c           |   6 +-
 src/init.c             |  18 ++
 vignettes/index.html   |   3 +
 vignettes/simLexis.rnw |  26 +-
 vignettes/yll.rnw      | 641 +++++++++++++++++++++++++++++++++++++++++++++++++
 60 files changed, 2807 insertions(+), 226 deletions(-)

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