[med-svn] [r-cran-epi] branch upstream updated (7eb9521 -> 467a8b3)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch upstream
in repository r-cran-epi.

      from  7eb9521   New upstream version 2.7
       new  467a8b3   New upstream version 2.19

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CHANGES                |  89 ++++++-
 DESCRIPTION            |  18 +-
 MD5                    | 101 ++++----
 NAMESPACE              |  13 +-
 R/LCa.fit.R            |  35 ++-
 R/Ns.r                 |   2 +-
 R/addCov.Lexis.R       | 113 +++++++++
 R/ci.lin.R             |  53 +++-
 R/clogistic.R          |   5 +-
 R/crr.Lexis.r          |  18 +-
 R/erl.R                |  21 +-
 R/lexis.R              |   3 +
 R/lls.R                |  19 +-
 R/mcutLexis.R          | 151 ++++++++++++
 R/plotCIF.R            |  54 +++++
 R/stackedCIF.R         |  72 ++++++
 R/xgrep.R              |   3 +
 R/zzz.R                |   4 -
 build/vignette.rds     | Bin 276 -> 309 bytes
 data/DMepi.rda         | Bin 0 -> 76086 bytes
 inst/doc/Follow-up.pdf | Bin 206532 -> 206908 bytes
 inst/doc/index.html    |   3 +
 inst/doc/simLexis.R    |  40 +--
 inst/doc/simLexis.pdf  | Bin 352900 -> 358803 bytes
 inst/doc/simLexis.rnw  |  26 +-
 inst/doc/yll.R         | 206 ++++++++++++++++
 inst/doc/yll.pdf       | Bin 0 -> 291815 bytes
 inst/doc/yll.rnw       | 641 +++++++++++++++++++++++++++++++++++++++++++++++++
 man/DMepi.Rd           |  41 ++++
 man/Icens.Rd           |   2 +-
 man/LCa.fit.Rd         |  38 +--
 man/Lexis.Rd           |   2 +
 man/Ns.Rd              |   2 +-
 man/addCov.Lexis.Rd    | 133 ++++++++++
 man/cal.yr.Rd          |   2 +-
 man/ci.cum.Rd          |  21 +-
 man/ci.lin.Rd          |  42 +++-
 man/cutLexis.Rd        |  11 +-
 man/erl.Rd             |  30 +--
 man/fit.mult.Rd        |   2 +-
 man/foreign.Lexis.Rd   |   2 +-
 man/gen.exp.Rd         |  22 +-
 man/lgrep.Rd           |  39 +++
 man/mcutLexis.Rd       |  96 ++++++++
 man/ncut.Rd            |   2 +-
 man/nice.Rd            |   2 +-
 man/plotCIF.Rd         | 122 ++++++++++
 man/plotEst.Rd         |   2 +-
 man/splitLexis.Rd      |   6 +-
 man/stack.Lexis.Rd     |   2 +-
 man/summary.Lexis.rd   |   4 +-
 man/transform.Lexis.Rd |  12 +-
 src/chinv2.c           |   4 +-
 src/cholesky2.c        |   4 +-
 src/chsolve2.c         |   4 +-
 src/clogit.c           |   6 +-
 src/init.c             |  18 ++
 vignettes/index.html   |   3 +
 vignettes/simLexis.rnw |  26 +-
 vignettes/yll.rnw      | 641 +++++++++++++++++++++++++++++++++++++++++++++++++
 60 files changed, 2807 insertions(+), 226 deletions(-)
 create mode 100644 R/addCov.Lexis.R
 create mode 100644 R/mcutLexis.R
 create mode 100644 R/plotCIF.R
 create mode 100644 R/stackedCIF.R
 create mode 100644 R/xgrep.R
 delete mode 100644 R/zzz.R
 create mode 100644 data/DMepi.rda
 create mode 100644 inst/doc/yll.R
 create mode 100644 inst/doc/yll.pdf
 create mode 100644 inst/doc/yll.rnw
 create mode 100644 man/DMepi.Rd
 create mode 100644 man/addCov.Lexis.Rd
 create mode 100644 man/lgrep.Rd
 create mode 100644 man/mcutLexis.Rd
 create mode 100644 man/plotCIF.Rd
 create mode 100644 src/init.c
 create mode 100644 vignettes/yll.rnw

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