[med-svn] [r-cran-luminescence] 05/07: Updated version 0.7.5 from 'upstream/0.7.5'
Andreas Tille
tille at debian.org
Tue Oct 10 17:08:14 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository r-cran-luminescence.
commit 0cfa50718bd1cf36400d55d848ef8b77d94ba1c9
Merge: 3a773c0 57c7309
Author: Andreas Tille <tille at debian.org>
Date: Tue Oct 10 19:01:09 2017 +0200
Updated version 0.7.5 from 'upstream/0.7.5'
with Debian dir 2e74e01b0fc939acc0a0787419a6eede6d39fa24
DESCRIPTION | 101 ++--
MD5 | 437 ++++++++------
NAMESPACE | 36 +-
NEWS | 489 +++++++++++++++-
R/CW2pHMi.R | 126 ++--
R/CW2pLM.R | 7 +-
R/CW2pLMi.R | 113 ++--
R/CW2pPMi.R | 106 ++--
R/Luminescence-package.R | 167 +++++-
R/PSL2Risoe.BINfileData.R | 186 ++++++
R/RLum.Analysis-class.R | 167 +++++-
R/RLum.Data.Curve-class.R | 104 +++-
R/RcppExports.R | 8 +-
R/Risoe.BINfileData2RLum.Analysis.R | 26 +-
R/Risoe.BINfileData2RLum.Data.Curve.R | 84 +--
R/RisoeBINfileData-class.R | 235 +++++---
R/analyse_FadingMeasurement.R | 821 +++++++++++++++++++++++++++
R/analyse_IRSAR.RF.R | 510 +++++++++++++----
R/analyse_SAR.CWOSL.R | 63 +-
R/analyse_SAR.TL.R | 342 ++++++-----
R/analyse_baSAR.R | 49 +-
R/analyse_portableOSL.R | 261 +++++++++
R/app_RLum.R | 6 +-
R/calc_AliquotSize.R | 137 +++--
R/calc_AverageDose.R | 517 +++++++++++++++++
R/calc_CentralDose.R | 16 +-
R/calc_CommonDose.R | 20 +-
R/calc_CosmicDoseRate.R | 83 +--
R/calc_FadingCorr.R | 17 +-
R/calc_FastRatio.R | 37 +-
R/calc_FiniteMixture.R | 2 +-
R/calc_Kars2008.R | 725 +++++++++++++++++++++++
R/calc_MaxDose.R | 96 +++-
R/calc_MinDose.R | 165 ++++--
R/calc_OSLLxTxRatio.R | 64 ++-
R/calc_Statistics.R | 26 +-
R/calc_TLLxTxRatio.R | 60 +-
R/calc_gSGC.R | 2 +-
R/convert_BIN2CSV.R | 115 ++++
R/convert_Daybreak2CSV.R | 91 +++
R/convert_PSL2CSV.R | 94 +++
R/convert_XSYG2CSV.R | 97 ++++
R/extract_IrradiationTimes.R | 57 +-
R/fit_CWCurve.R | 30 +-
R/fit_LMCurve.R | 17 +-
R/get_Layout.R | 14 +-
R/get_Quote.R | 4 +-
R/get_RLum.R | 75 ++-
R/github.R | 217 +++++++
R/install_DevelopmentVersion.R | 114 ++++
R/internals_RLum.R | 173 ++++++
R/merge_RLum.Data.Curve.R | 23 +-
R/merge_Risoe.BINfileData.R | 13 +-
R/methods_RLum.R | 34 +-
R/model_LuminescenceSignals.R | 18 +-
R/plot_AbanicoPlot.R | 9 +-
R/plot_DRTResults.R | 12 +-
R/plot_DetPlot.R | 6 +-
R/plot_FilterCombinations.R | 197 +++++--
R/plot_GrowthCurve.R | 688 ++++++++++++++++------
R/plot_KDE.R | 84 +--
R/plot_RLum.Analysis.R | 148 +++--
R/plot_RLum.Data.Curve.R | 72 +--
R/plot_RLum.Data.Spectrum.R | 87 ++-
R/plot_RLum.R | 14 +-
R/plot_RLum.Results.R | 6 +-
R/plot_RadialPlot.R | 176 +++---
R/plot_ViolinPlot.R | 7 +-
R/read_BIN2R.R | 150 +++--
R/read_Daybreak2R.R | 469 +++++++++++----
R/read_PSL2R.R | 313 ++++++++++
R/read_SPE2R.R | 3 +-
R/read_XSYG2R.R | 19 +-
R/set_RLum.R | 9 +-
R/set_Risoe.BINfileData.R | 11 +-
R/smooth_RLum.R | 73 +++
R/template_DRAC.R | 22 +-
R/use_DRAC.R | 151 +++--
R/verify_SingleGrainData.R | 16 +-
R/write_R2BIN.R | 28 +-
R/write_RLum2CSV.R | 240 ++++++++
R/zzz.R | 2 +-
data/ExampleData.BINfileData.RData | Bin 344081 -> 688543 bytes
data/ExampleData.Fading.RData | Bin 0 -> 2778 bytes
data/ExampleData.portableOSL.RData | Bin 0 -> 32632 bytes
data/datalist | 22 +-
inst/CITATION | 9 +-
inst/NEWS.Rd | 639 ++++++++++++++++++++-
man/Analyse_SAR.OSLdata.Rd | 17 +-
man/BaseDataSet.CosmicDoseRate.Rd | 2 +-
man/CW2pHMi.Rd | 19 +-
man/CW2pLM.Rd | 17 +-
man/CW2pLMi.Rd | 19 +-
man/CW2pPMi.Rd | 19 +-
man/ExampleData.BINfileData.Rd | 2 +-
man/ExampleData.CW_OSL_Curve.Rd | 1 -
man/ExampleData.DeValues.Rd | 1 -
man/ExampleData.Fading.Rd | 93 +++
man/ExampleData.FittingLM.Rd | 1 -
man/ExampleData.LxTxData.Rd | 1 -
man/ExampleData.LxTxOSLData.Rd | 1 -
man/ExampleData.RLum.Analysis.Rd | 2 +-
man/ExampleData.RLum.Data.Image.Rd | 2 +-
man/ExampleData.XSYG.Rd | 2 +-
man/ExampleData.portableOSL.Rd | 25 +
man/GitHub-API.Rd | 100 ++++
man/Luminescence-package.Rd | 76 +--
man/PSL2Risoe.BINfileData.Rd | 65 +++
man/RLum-class.Rd | 15 +-
man/RLum.Analysis-class.Rd | 44 +-
man/RLum.Data-class.Rd | 8 +-
man/RLum.Data.Curve-class.Rd | 46 +-
man/RLum.Data.Image-class.Rd | 19 +-
man/RLum.Data.Spectrum-class.Rd | 19 +-
man/RLum.Results-class.Rd | 19 +-
man/Risoe.BINfileData-class.Rd | 65 ++-
man/Risoe.BINfileData2RLum.Analysis.Rd | 21 +-
man/Second2Gray.Rd | 21 +-
man/analyse_FadingMeasurement.Rd | 149 +++++
man/analyse_IRSAR.RF.Rd | 159 ++++--
man/analyse_SAR.CWOSL.Rd | 22 +-
man/analyse_SAR.TL.Rd | 27 +-
man/analyse_baSAR.Rd | 28 +-
man/analyse_pIRIRSequence.Rd | 17 +-
man/analyse_portableOSL.Rd | 78 +++
man/app_RLum.Rd | 11 +-
man/apply_CosmicRayRemoval.Rd | 17 +-
man/apply_EfficiencyCorrection.Rd | 17 +-
man/as.Rd | 9 +-
man/bin_RLum.Data.Rd | 15 +-
man/calc_AliquotSize.Rd | 34 +-
man/calc_AverageDose.Rd | 143 +++++
man/calc_CentralDose.Rd | 29 +-
man/calc_CommonDose.Rd | 25 +-
man/calc_CosmicDoseRate.Rd | 19 +-
man/calc_FadingCorr.Rd | 23 +-
man/calc_FastRatio.Rd | 30 +-
man/calc_FiniteMixture.Rd | 17 +-
man/calc_FuchsLang2001.Rd | 17 +-
man/calc_HomogeneityTest.Rd | 15 +-
man/calc_IEU.Rd | 19 +-
man/calc_Kars2008.Rd | 180 ++++++
man/calc_MaxDose.Rd | 98 ++--
man/calc_MinDose.Rd | 148 +++--
man/calc_OSLLxTxRatio.Rd | 31 +-
man/calc_SourceDoseRate.Rd | 17 +-
man/calc_Statistics.Rd | 21 +-
man/calc_TLLxTxRatio.Rd | 34 +-
man/calc_ThermalLifetime.Rd | 15 +-
man/calc_gSGC.Rd | 15 +-
man/convert_BIN2CSV.Rd | 56 ++
man/convert_Daybreak2CSV.Rd | 52 ++
man/convert_PSL2CSV.Rd | 53 ++
man/convert_XSYG2CSV.Rd | 56 ++
man/extract_IrradiationTimes.Rd | 47 +-
man/fit_CWCurve.Rd | 21 +-
man/fit_LMCurve.Rd | 23 +-
man/get_Layout.Rd | 9 +-
man/get_Quote.Rd | 9 +-
man/get_RLum.Rd | 22 +-
man/get_Risoe.BINfileData.Rd | 15 +-
man/get_rightAnswer.Rd | 9 +-
man/install_DevelopmentVersion.Rd | 44 ++
man/length_RLum.Rd | 17 +-
man/merge_RLum.Analysis.Rd | 17 +-
man/merge_RLum.Data.Curve.Rd | 23 +-
man/merge_RLum.Rd | 17 +-
man/merge_RLum.Results.Rd | 9 +-
man/merge_Risoe.BINfileData.Rd | 23 +-
man/methods_RLum.Rd | 114 ++--
man/model_LuminescenceSignals.Rd | 50 +-
man/names_RLum.Rd | 17 +-
man/plot_AbanicoPlot.Rd | 23 +-
man/plot_DRTResults.Rd | 17 +-
man/plot_DetPlot.Rd | 15 +-
man/plot_FilterCombinations.Rd | 49 +-
man/plot_GrowthCurve.Rd | 42 +-
man/plot_Histogram.Rd | 13 +-
man/plot_KDE.Rd | 19 +-
man/plot_NRt.Rd | 12 +-
man/plot_RLum.Analysis.Rd | 32 +-
man/plot_RLum.Data.Curve.Rd | 17 +-
man/plot_RLum.Data.Image.Rd | 17 +-
man/plot_RLum.Data.Spectrum.Rd | 40 +-
man/plot_RLum.Rd | 17 +-
man/plot_RLum.Results.Rd | 17 +-
man/plot_RadialPlot.Rd | 31 +-
man/plot_Risoe.BINfileData.Rd | 17 +-
man/plot_ViolinPlot.Rd | 15 +-
man/read_BIN2R.Rd | 31 +-
man/read_Daybreak2R.Rd | 42 +-
man/read_PSL2R.Rd | 80 +++
man/read_SPE2R.Rd | 20 +-
man/read_XSYG2R.Rd | 17 +-
man/replicate_RLum.Rd | 15 +-
man/report_RLum.Rd | 13 +-
man/sTeve.Rd | 12 +-
man/set_RLum.Rd | 17 +-
man/set_Risoe.BINfileData.Rd | 18 +-
man/smooth_RLum.Rd | 74 +++
man/structure_RLum.Rd | 17 +-
man/template_DRAC.Rd | 14 +-
man/tune_Data.Rd | 15 +-
man/use_DRAC.Rd | 21 +-
man/verify_SingleGrainData.Rd | 31 +-
man/write_R2BIN.Rd | 19 +-
man/write_RLum2CSV.Rd | 81 +++
src/Luminescence_init.c | 26 +
src/RcppExports.cpp | 28 +-
src/analyse_IRSARRF_SRS.cpp | 143 ++++-
src/create_RLumDataCurve_matrix.cpp | 115 ++++
tests/testthat.R | 4 +
tests/testthat/test_Analyse_SAROSLdata.R | 17 +
tests/testthat/test_CW2pX.R | 71 +++
tests/testthat/test_PSL2RisoeBINfiledata.R | 14 +
tests/testthat/test_RisoeBINfileData-class.R | 16 +
tests/testthat/test_Second2Gray.R | 21 +
tests/testthat/test_analyse_IRSARRF.R | 54 ++
tests/testthat/test_analyse_SARCWOSL.R | 58 ++
tests/testthat/test_analyse_SARTL.R | 24 +
tests/testthat/test_analyse_baSAR.R | 51 ++
tests/testthat/test_analyse_pIRIRSequence.R | 52 ++
tests/testthat/test_analyse_portableOSL.R | 27 +
tests/testthat/test_bin_RLumData.R | 27 +
tests/testthat/test_calc_AliquotSize.R | 42 ++
tests/testthat/test_calc_AverageDose.R | 24 +
tests/testthat/test_calc_CentralDose.R | 27 +
tests/testthat/test_calc_CommonDose.R | 26 +
tests/testthat/test_calc_CosmicDoseRate.R | 57 ++
tests/testthat/test_calc_FadingCorr.R | 47 ++
tests/testthat/test_calc_FastRatio.R | 42 ++
tests/testthat/test_calc_FiniteMixture.R | 31 +
tests/testthat/test_calc_FuchsLang2001.R | 28 +
tests/testthat/test_calc_HomogeneityTest.R | 25 +
tests/testthat/test_calc_IEU.R | 25 +
tests/testthat/test_calc_Kars2008.R | 57 ++
tests/testthat/test_calc_MaxDose.R | 34 ++
tests/testthat/test_calc_MinDose.R | 33 ++
tests/testthat/test_calc_OSLLxTxRatio.R | 34 ++
tests/testthat/test_calc_SourceDoseRate.R | 23 +
tests/testthat/test_calc_Statistics.R | 87 +++
tests/testthat/test_calc_TLLxTxRatio.R | 47 ++
tests/testthat/test_calc_ThermalLifetime.R | 81 +++
tests/testthat/test_calc_gSGC.R | 28 +
tests/testthat/test_convert_X2CSV.R | 25 +
tests/testthat/test_fit_CWCurve.R | 24 +
tests/testthat/test_fit_LMCurve.R | 55 ++
tests/testthat/test_get_RLum.R | 26 +
tests/testthat/test_merge_RLumDataCurve.R | 22 +
tests/testthat/test_merge_RisoeBINfileData.R | 19 +
tests/testthat/test_names_RLum.R | 10 +
tests/testthat/test_plot_AbanicoPlot.R | 166 ++++++
tests/testthat/test_plot_Functions.R | 136 +++++
tests/testthat/test_plot_GrowthCurve.R | 84 +++
tests/testthat/test_read_BIN2R.R | 47 ++
tests/testthat/test_replicate_RLum.R | 12 +
tests/testthat/test_smooth_RLum.R | 25 +
tests/testthat/test_template_DRAC.R | 13 +
tests/testthat/test_verify_SingleGrainData.R | 14 +
tests/testthat/test_write_R2BIN.R | 57 ++
tests/testthat/test_write_RLum2CSV.R | 15 +
tests/testthat/test_zzz.R | 16 +
262 files changed, 14577 insertions(+), 2868 deletions(-)
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