[med-svn] [roary] 02/07: Updated version 3.11.0+dfsg from 'upstream/3.11.0+dfsg'
Sascha Steinbiss
satta at debian.org
Wed Oct 11 08:51:49 UTC 2017
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satta pushed a commit to branch master
in repository roary.
commit 6a08b53e0309c676da2f93f9d84d3af5c56cc8de
Merge: f2fb3bf 622661b
Author: Sascha Steinbiss <satta at debian.org>
Date: Wed Oct 11 10:17:34 2017 +0200
Updated version 3.11.0+dfsg from 'upstream/3.11.0+dfsg'
with Debian dir 859d58b30b47e300f98c6ebfbbaaf3fb7ee5ffad
.travis.yml | 11 ++-
dist.ini | 4 +-
install_dependencies.sh | 12 ++--
lib/Bio/Roary/CommandLine/Roary.pm | 2 +-
lib/Bio/Roary/External/CheckTools.pm | 8 +--
lib/Bio/Roary/MergeMultifastaAlignments.pm | 2 +-
lib/Bio/Roary/PrepareInputFiles.pm | 81 +++++++++++++++-------
lib/Bio/Roary/ReformatInputGFFs.pm | 72 +++++++++++++++----
t/Bio/Roary/ReformatInputGFFs.t | 12 ++--
t/data/expected_core_gene_alignment_core0.66.aln | 2 +-
t/data/overall_gene_presence_absence.csv | 42 +++++------
.../reformat_input_gffs/expected_fixed_query_2.gff | 10 +--
12 files changed, 168 insertions(+), 90 deletions(-)
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