[med-svn] [python-cobra] 02/03: Merge tag 'upstream/0.9.0'

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository python-cobra.

commit 8dee53dfb79748e152e0f78ee72df7132226b92e
Merge: bc0100e 5444318
Author: Afif Elghraoui <afif at debian.org>
Date:   Tue Oct 17 22:11:37 2017 -0400

    Merge tag 'upstream/0.9.0'
    
    Upstream version 0.9.0

 .travis.yml                                  |   2 +-
 appveyor.yml                                 |   2 +-
 cobra/__init__.py                            |   2 +-
 cobra/core/gene.py                           |   4 +-
 cobra/core/metabolite.py                     |   7 +-
 cobra/core/model.py                          |  65 ++++--
 cobra/core/reaction.py                       |  43 ++--
 cobra/core/solution.py                       |  11 +-
 cobra/flux_analysis/phenotype_phase_plane.py | 305 +++++++++++++++------------
 cobra/flux_analysis/summary.py               |  10 +-
 cobra/manipulation/validate.py               |   4 -
 cobra/test/data/iJO1366.pickle               | Bin 1810497 -> 1810487 bytes
 cobra/test/data/mini.pickle                  | Bin 32825 -> 33312 bytes
 cobra/test/data/raven.pickle                 | Bin 13758 -> 13310 bytes
 cobra/test/data/salmonella.pickle            | Bin 2151196 -> 2151186 bytes
 cobra/test/data/textbook_solution.pickle     | Bin 143584 -> 7330 bytes
 cobra/test/test_flux_analysis.py             |  22 +-
 cobra/test/test_manipulation.py              |   3 +-
 cobra/test/test_model.py                     |  27 +++
 cobra/util/util.py                           |   7 +
 release-notes/0.8.2.md                       |  13 +-
 release-notes/0.9.0.md                       |  30 +++
 release-notes/next-release.md                |   2 +
 scripts/compare-benchmark.py                 |  16 +-
 setup.cfg                                    |   2 +-
 setup.py                                     |   2 +-
 26 files changed, 365 insertions(+), 214 deletions(-)

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