[med-svn] [r-cran-etm] 06/07: Updated version 0.6-2 from 'upstream/0.6-2'

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-cran-etm.

commit 1de0a7ac4a1ab85c590727e47e22b327f473a5f8
Merge: 8a0c010 8aad6a4
Author: Andreas Tille <tille at debian.org>
Date:   Thu Oct 19 12:29:03 2017 +0200

    Updated version 0.6-2 from 'upstream/0.6-2'
    
    with Debian dir 9e5a543e653f128eed18e3949368d29f37f564bb

 ChangeLog                     | 147 ++++++++++
 DESCRIPTION                   |  14 +
 MD5                           |  67 +++++
 NAMESPACE                     |  20 ++
 R/ci.transfo.R                |  68 +++++
 R/clos.R                      | 172 +++++++++++
 R/etm.R                       | 335 +++++++++++++++++++++
 R/etmCIF.R                    |  77 +++++
 R/extract.R                   |  67 +++++
 R/ggtransfo.etm.R             |  36 +++
 R/lines.etm.R                 |  58 ++++
 R/misc.R                      |  59 ++++
 R/plot.clos.etm.R             |  56 ++++
 R/plot.etm.R                  |  89 ++++++
 R/plot.etmCIF.R               | 127 ++++++++
 R/prepare.los.data.R          | 107 +++++++
 R/print.clos.etm.R            |  15 +
 R/print.etm.R                 |  29 ++
 R/print.etmCIF.R              |  39 +++
 R/print.summary.etm.R         |  20 ++
 R/pseudo_clos.R               | 178 ++++++++++++
 R/summary.etm.R               |  42 +++
 R/summary.etmCIF.R            |  46 +++
 R/transfoData.R               | 118 ++++++++
 R/xyplot.etm.R                |  46 +++
 build/vignette.rds            | Bin 0 -> 243 bytes
 data/abortion.txt.gz          | Bin 0 -> 4612 bytes
 data/fourD.rda                | Bin 0 -> 9467 bytes
 data/los.data.csv.gz          | Bin 0 -> 3189 bytes
 data/sir.cont.txt.gz          | Bin 0 -> 10609 bytes
 inst/CITATION                 |  20 ++
 inst/doc/etmCIF_tutorial.R    | 115 ++++++++
 inst/doc/etmCIF_tutorial.Rnw  | 302 +++++++++++++++++++
 inst/doc/etmCIF_tutorial.pdf  | Bin 0 -> 164890 bytes
 man/abortion.Rd               |  35 +++
 man/clos.Rd                   | 145 ++++++++++
 man/closPseudo.Rd             | 116 ++++++++
 man/etm.Rd                    | 198 +++++++++++++
 man/etmCIF.Rd                 |  69 +++++
 man/etmprep.Rd                |  96 ++++++
 man/fourD.Rd                  |  47 +++
 man/ggtransfo.Rd              | 128 ++++++++
 man/lines.etm.Rd              |  51 ++++
 man/los.data.Rd               |  30 ++
 man/phiPseudo.Rd              |  70 +++++
 man/plot.clos.etm.Rd          |  53 ++++
 man/plot.etm.Rd               |  73 +++++
 man/plot.etmCIF.Rd            |  84 ++++++
 man/prepare.los.data.Rd       |  35 +++
 man/print.clos.etm.Rd         |  25 ++
 man/print.etm.Rd              |  29 ++
 man/print.etmCIF.Rd           |  26 ++
 man/sir.cont.Rd               |  56 ++++
 man/summary.etm.Rd            |  48 +++
 man/summary.etmCIF.Rd         |  43 +++
 man/tra.Rd                    |  58 ++++
 man/trprob_trcov.Rd           |  74 +++++
 man/xyplot.etm.Rd             |  43 +++
 src/cov_dna.c                 |  96 ++++++
 src/los_etm.cc                | 195 +++++++++++++
 src/matrix.cc                 | 490 +++++++++++++++++++++++++++++++
 src/matrix.h                  | 124 ++++++++
 src/risk_set_etm.c            |  42 +++
 tests/test.etmCIF.R           | 142 +++++++++
 tests/test.etmCIF.Rout.save   | 516 +++++++++++++++++++++++++++++++++
 tests/tests.etm.R             | 220 ++++++++++++++
 tests/tests.etm.Rout.save     | 659 ++++++++++++++++++++++++++++++++++++++++++
 vignettes/etmCIF_tutorial.Rnw | 302 +++++++++++++++++++
 68 files changed, 6887 insertions(+)

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