[med-svn] [r-cran-fail] 01/08: Working through the chain of new dependencies for BioConductor updates
Andreas Tille
tille at debian.org
Thu Oct 19 10:47:19 UTC 2017
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tille pushed a commit to branch master
in repository r-cran-fail.
commit 981e49eebcd752afcdd612fb6d04893260445c3c
Author: Andreas Tille <tille at debian.org>
Date: Sat Jun 14 22:28:14 2014 +0000
Working through the chain of new dependencies for BioConductor updates
---
debian/README.test | 9 +++++++++
debian/changelog | 5 +++++
debian/compat | 1 +
debian/control | 25 +++++++++++++++++++++++++
debian/copyright | 42 ++++++++++++++++++++++++++++++++++++++++++
debian/docs | 3 +++
debian/rules | 4 ++++
debian/source/format | 1 +
debian/tests/control | 3 +++
debian/tests/run-unit-test | 11 +++++++++++
debian/watch | 2 ++
11 files changed, 106 insertions(+)
diff --git a/debian/README.test b/debian/README.test
new file mode 100644
index 0000000..c850edd
--- /dev/null
+++ b/debian/README.test
@@ -0,0 +1,9 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+
+cd tests
+LC_ALL=C R --no-save < test_all.R
+
+in order to confirm its integrity.
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..a45e010
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+r-cran-fail (1.2-1) UNRELEASED; urgency=low
+
+ * Initial release (Closes: #)
+
+ -- Andreas Tille <tille at debian.org> Fri, 13 Jun 2014 22:52:06 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..3cd1f40
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,25 @@
+Source: r-cran-fail
+Maintainer: Debian Science Team <debian-science-maintainers at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+XS-Testsuite: autopkgtest
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ cdbs,
+ r-base-dev (>= 3.0.0),
+ r-cran-bbmisc
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/packages/trunk/R/r-cran-fail/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-fail/trunk/
+Homepage: http://cran.r-project.org/web/packages/fail/
+
+Package: r-cran-fail
+Architecture: any
+Depends: ${shlibs:Depends},
+ ${R:Depends},
+ r-cran-bbmisc
+Description: GNU R File Abstraction Interface Layer (FAIL) mimicking a key-value store
+ This package provides a File Abstraction Interface Layer (FAIL)
+ mimicking a key-value store. It is a more comfortable interface to work
+ with a directory of R data or source files.
+
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..ac8ddb8
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,42 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: BatchJobs
+Upstream-Contact: Michel Lang <michellang at gmail.com>
+Source: http://cran.r-project.org/web/packages/fail/
+
+Files: *
+Copyright: 2012-2014 Michel Lang <michellang at gmail.com>
+License: BSD3clause
+
+Files: debian/*
+Copyright: 2014 Andreas Tille <tille at debian.org>
+License: BSD3clause
+
+License: BSD3clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are
+ met:
+ .
+ Redistributions of source code must retain the above copyright
+ notice, this list of conditions and the following disclaimer.
+ .
+ Redistributions in binary form must reproduce the above copyright
+ notice, this list of conditions and the following disclaimer in
+ the documentation and/or other materials provided with the
+ distribution.
+ .
+ Neither the name of the <ORGANIZATION> nor the names of its
+ contributors may be used to endorse or promote products derived
+ from this software without specific prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+ "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+ A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+ HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+ LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+ DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+ THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..960011c
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1,3 @@
+tests
+debian/README.test
+debian/tests/run-unit-test
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..d643f96
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,4 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+
+include /usr/share/R/debian/r-cran.mk
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/tests/control b/debian/tests/control
new file mode 100644
index 0000000..b044b0c
--- /dev/null
+++ b/debian/tests/control
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @, r-cran-testthat
+Restrictions: allow-stderr
diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test
new file mode 100644
index 0000000..17b3dc9
--- /dev/null
+++ b/debian/tests/run-unit-test
@@ -0,0 +1,11 @@
+#!/bin/sh -e
+
+pkg=r-cran-fail
+if [ "$ADTTMP" = "" ] ; then
+ ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+fi
+cd $ADTTMP
+cp -a /usr/share/doc/${pkg}/tests/* $ADTTMP
+gunzip -r *
+LC_ALL=C R --no-save < test_all.R
+rm -fr $ADTTMP/*
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..de966ff
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,2 @@
+version=3
+http://cran.r-project.org/src/contrib/fail_([-\d.]*)\.tar\.gz
--
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