[med-svn] [daligner] branch upstream updated (297c59f -> 3c46bb0)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to branch upstream
in repository daligner.

      from  297c59f   Imported Upstream version 1.0+20161119
       new  3c46bb0   New upstream version 1.0+20171010

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DB.c           |  3 ++-
 HPC.daligner.c | 44 ++++++++++++++++++++++++-------------
 LAcat.c        | 23 ++++++++++++--------
 LAcheck.c      |  6 +++---
 LAdump.c       | 39 +++++++++++++++++++++++++--------
 LAindex.c      |  6 +++---
 LAmerge.c      | 19 ++++++++++------
 LAshow.c       | 43 +++++++++++++++++++++++++++----------
 LAsort.c       | 21 +++++++++++-------
 LAsplit.c      | 12 +++++------
 README.md      | 30 ++++++++++++++++----------
 align.c        | 55 +++++++++++++++++++++++++++++++----------------
 daligner.c     | 35 ++++++++++++++++++++----------
 filter.c       | 68 ++++++++++++++++++++++++++++++++++++++++++++--------------
 filter.h       |  1 +
 15 files changed, 276 insertions(+), 129 deletions(-)

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