[med-svn] [hinge] 03/12: Merge tag 'upstream/0.5'

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository hinge.

commit c9dc1d669121a9575e47ca820d337e551714d353
Merge: bc727a9 e288b49
Author: Afif Elghraoui <afif at debian.org>
Date:   Tue Oct 17 23:01:55 2017 -0400

    Merge tag 'upstream/0.5'
    
    Upstream version 0.5

 demo/NCTC9657_demo/run.sh                |   4 ++
 demo/ecoli_P4_demo/run.sh                |   5 +-
 demo/ecoli_demo/run.sh                   |   4 +-
 demo/ecoli_nanopore/run.sh               |   4 +-
 scripts/draw_pileup_region.py            |  21 ++++--
 scripts/pruning_and_clipping_nanopore.py |   0
 src/consensus/consensus.cpp              |  22 ++++--
 src/consensus/draft.cpp                  | 113 +++++++++++++++++++++++--------
 src/filter/filter.cpp                    | 113 +++++++++++++++++++++++--------
 src/include/LAInterface.h                |   3 +
 src/layout/hinging.cpp                   | 107 +++++++++++++++++++++++------
 src/maximal/maximal.cpp                  | 107 ++++++++++++++++++++---------
 utils/update.sh                          |   2 +-
 13 files changed, 374 insertions(+), 131 deletions(-)

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