[med-svn] [hinge] branch upstream updated (e62bdef -> ff0d123)

[Afif Elghraoui]

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afif pushed a change to branch upstream
in repository hinge.

      from  e62bdef   Imported Upstream version 0.42
       new  e288b49   New upstream version 0.5
       new  ff0d123   New upstream version 0.5.0

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Summary of changes:
 demo/NCTC9657_demo/run.sh                |   4 ++
 demo/ecoli_P4_demo/run.sh                |   5 +-
 demo/ecoli_demo/run.sh                   |   4 +-
 demo/ecoli_nanopore/run.sh               |   4 +-
 scripts/draw_pileup_region.py            |  21 ++++--
 scripts/pruning_and_clipping_nanopore.py |   0
 src/consensus/consensus.cpp              |  22 ++++--
 src/consensus/draft.cpp                  | 113 +++++++++++++++++++++++--------
 src/filter/filter.cpp                    | 113 +++++++++++++++++++++++--------
 src/include/LAInterface.h                |   3 +
 src/layout/hinging.cpp                   | 107 +++++++++++++++++++++++------
 src/maximal/maximal.cpp                  | 107 ++++++++++++++++++++---------
 utils/update.sh                          |   2 +-
 13 files changed, 374 insertions(+), 131 deletions(-)
 mode change 100644 => 100755 scripts/pruning_and_clipping_nanopore.py

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