[med-svn] [gmap] branch master updated (6e1e2c3 -> bbe4a65)

[Alex Mestiashvili]

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malex-guest pushed a change to branch master
in repository gmap.

      from  6e1e2c3   Fix OMICS entry
       new  08b0046   Update d/watch to use @ANY_VERSION@ and @ARCHIVE_EXT@
       new  7f5d440   New upstream version 2017-10-12
       new  b06d024   Updated version 2017-10-12 from 'upstream/2017-10-12'
       new  a6cf006   Update d/libgma1.symbols
       new  bbe4a65   Update changelog, upload to unstable

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ChangeLog               |   39 ++
 VERSION                 |    2 +-
 configure               |   24 +-
 debian/changelog        |   12 +
 debian/libgmap1.symbols | 1212 +++++++++++++++++++++++------------------------
 debian/watch            |    2 +-
 src/cellpool.c          |    7 +-
 src/cellpool.h          |    9 +-
 src/chrom.c             |    8 +-
 src/gmap.c              |   11 +-
 src/gsnap.c             |   11 +-
 src/outbuffer.c         |    8 +-
 src/pair.c              |   75 +--
 src/samflags.h          |    6 +-
 src/samheader.c         |   14 +-
 src/samprint.c          |   16 +-
 src/stage2.c            |  283 ++++++++---
 src/stage3.c            |   27 +-
 src/stage3hr.c          |   28 +-
 src/translation.c       |    8 +-
 src/translation.h       |    4 +-
 21 files changed, 1053 insertions(+), 753 deletions(-)

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