[med-svn] [gmap] 03/05: Updated version 2017-10-12 from 'upstream/2017-10-12'

[Alex Mestiashvili]

This is an automated email from the git hooks/post-receive script.

malex-guest pushed a commit to branch master
in repository gmap.

commit b06d024574d4abfdca8825e489dd2759f1697ae5
Merge: 08b0046 7f5d440
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Fri Oct 20 23:37:56 2017 +0200

    Updated version 2017-10-12 from 'upstream/2017-10-12'
    
    with Debian dir 7fbece18e4da24549ea76b7f2d3a56db90f717ca

 ChangeLog         |  39 ++++++++
 VERSION           |   2 +-
 configure         |  24 ++---
 src/cellpool.c    |   7 +-
 src/cellpool.h    |   9 +-
 src/chrom.c       |   8 +-
 src/gmap.c        |  11 ++-
 src/gsnap.c       |  11 ++-
 src/outbuffer.c   |   8 +-
 src/pair.c        |  75 ++++++++-------
 src/samflags.h    |   6 +-
 src/samheader.c   |  14 ++-
 src/samprint.c    |  16 ++-
 src/stage2.c      | 283 +++++++++++++++++++++++++++++++++++++++++++-----------
 src/stage3.c      |  27 +++---
 src/stage3hr.c    |  28 +++++-
 src/translation.c |   8 +-
 src/translation.h |   4 +-
 18 files changed, 434 insertions(+), 146 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/gmap.git