[med-svn] [trnascan-se] 02/03: Updated version 1.23 from 'upstream/1.23'

[Steffen Möller]

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moeller pushed a commit to branch master
in repository trnascan-se.

commit 4cf3079e3579f21c819a55f6024148fb83d96e31
Merge: 602c562 dc9d5b7
Author: Steffen Moeller <moeller at debian.org>
Date:   Wed Sep 13 13:33:21 2017 +0200

    Updated version 1.23 from 'upstream/1.23'
    
    with Debian dir 8f3160338953e66f534fb4e009c69e7368991433

 Archaea-BHB-noncan.cm     |  167 -
 ESELCinf-c.cm             |  384 ---
 FILES                     |    8 +-
 Makefile                  |   17 +-
 Manual.ps                 | 8019 ++++++++++++++++++---------------------------
 PSELCinf-c.cm             |  406 ---
 README                    |   51 +-
 Release.history           |   42 -
 TRNAinf-arch-3h-nc.cm     |  242 --
 TRNAinf-arch-5h-nc.cm     |  165 -
 TRNAinf-arch-c.cm         |  415 ---
 TRNAinf-arch-ns-c.cm      |  416 ---
 TRNAinf-bact-c.cm         |  415 ---
 TRNAinf-bact-ns-c.cm      |  416 ---
 TRNAinf-c.cm              |  403 ---
 TRNAinf-euk-c.cm          |  403 ---
 TRNAinf-euk-ns-c.cm       |  404 ---
 TRNAinf-ns-c.cm           |  404 ---
 debug.c                   |    2 +-
 fasta2gsi.pl              |    0
 gnuregex.c                |    2 +-
 pavesi.c                  |    4 +-
 save.c                    |   33 +-
 scorestack.c              |    2 +-
 sqio.c                    |   66 +-
 sstofa.pl                 |    0
 tRNAscan-SE.src           | 4344 +++++++++++++++++++-----
 tRNAscanSE/CM.pm          | 2561 ---------------
 tRNAscanSE/Constants.pm   |  105 -
 tRNAscanSE/Eufind.pm      |  261 --
 tRNAscanSE/GeneticCode.pm |  291 --
 tRNAscanSE/LogFile.pm     |   87 -
 tRNAscanSE/Options.pm     |  668 ----
 tRNAscanSE/SS.pm          |  197 --
 tRNAscanSE/ScanResult.pm  |  657 ----
 tRNAscanSE/Sequence.pm    |  763 -----
 tRNAscanSE/Stats.pm       |  430 ---
 tRNAscanSE/Tscan.pm       |  393 ---
 tRNAscanSE/Utils.pm       |  175 -
 testrun.ref               |   16 +-
 trnascan.c                |   63 +-
 41 files changed, 6850 insertions(+), 17047 deletions(-)

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