[med-svn] [r-bioc-shortread] 02/05: New upstream version 1.34.2

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-bioc-shortread.

commit bca0e11f3b1dde56360e162606d875108af0b3b4
Author: Andreas Tille <tille at debian.org>
Date:   Sun Oct 22 19:29:58 2017 +0200

    New upstream version 1.34.2
---
 DESCRIPTION           |   6 +++---
 R/AllGenerics-Base.R  |   3 +++
 build/vignette.rds    | Bin 261 -> 261 bytes
 inst/doc/Overview.pdf | Bin 133258 -> 132945 bytes
 4 files changed, 6 insertions(+), 3 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index a299ef2..51a8af4 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: ShortRead
 Type: Package
 Title: FASTQ input and manipulation
-Version: 1.34.1
+Version: 1.34.2
 Author: Martin Morgan, Michael Lawrence, Simon Anders
 Maintainer: Bioconductor Package Maintainer
  <maintainer at bioconductor.org>
@@ -14,7 +14,7 @@ Description: This package implements sampling, iteration, and input of
         alignment formats.
 License: Artistic-2.0
 LazyLoad: yes
-Depends: BiocGenerics (>= 0.11.3), BiocParallel, Biostrings (>=
+Depends: BiocGenerics (>= 0.22.1), BiocParallel, Biostrings (>=
         2.37.1), Rsamtools (>= 1.21.4), GenomicAlignments (>= 1.5.4)
 Imports: Biobase, S4Vectors (>= 0.13.8), IRanges (>= 2.3.7),
         GenomeInfoDb (>= 1.1.19), GenomicRanges (>= 1.21.6), hwriter,
@@ -23,4 +23,4 @@ Suggests: BiocStyle, RUnit, biomaRt, GenomicFeatures, yeastNagalakshmi
 LinkingTo: S4Vectors, IRanges, XVector, Biostrings
 biocViews: DataImport, Sequencing, QualityControl
 NeedsCompilation: yes
-Packaged: 2017-08-30 23:11:43 UTC; biocbuild
+Packaged: 2017-10-07 22:41:16 UTC; biocbuild
diff --git a/R/AllGenerics-Base.R b/R/AllGenerics-Base.R
index d344908..c41e9a3 100644
--- a/R/AllGenerics-Base.R
+++ b/R/AllGenerics-Base.R
@@ -270,6 +270,7 @@ setGeneric("FastqFileList",
            function(..., class="FastqFile")
            standardGeneric("FastqFileList"),
            signature="...")
+BiocGenerics:::apply_hotfix73465(getGeneric("FastqFileList"))
 
 setGeneric("FastqStreamer",
            function(con, n, readerBlockSize=1e8, verbose=FALSE)
@@ -280,11 +281,13 @@ setGeneric("FastqStreamerList",
            function(..., n, readerBlockSize=1e8, verbose=FALSE)
            standardGeneric("FastqStreamerList"),
            signature="...")
+BiocGenerics:::apply_hotfix73465(getGeneric("FastqStreamerList"))
 
 setGeneric("FastqSamplerList",
            function(..., n=1e6, readerBlockSize=1e8, verbose=FALSE,
                     ordered = FALSE)
            standardGeneric("FastqSamplerList"),
            signature="...")
+BiocGenerics:::apply_hotfix73465(getGeneric("FastqSamplerList"))
 
 setGeneric("yield", function(x, ...) standardGeneric("yield"))
diff --git a/build/vignette.rds b/build/vignette.rds
index 9d87be1..0710548 100644
Binary files a/build/vignette.rds and b/build/vignette.rds differ
diff --git a/inst/doc/Overview.pdf b/inst/doc/Overview.pdf
index 6981d77..ce01005 100644
Binary files a/inst/doc/Overview.pdf and b/inst/doc/Overview.pdf differ

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