[med-svn] [rapmap] branch master updated (0f47d9f -> c4b732b)
Steffen Möller
moeller at moszumanska.debian.org
Sun Oct 22 19:28:22 UTC 2017
This is an automated email from the git hooks/post-receive script.
moeller pushed a change to branch master
in repository rapmap.
from 0f47d9f Added refs to registries
new b8057c0 New upstream version 0.5.0+dfsg
new e25c54f Update upstream source from tag 'upstream/0.5.0+dfsg'
new c4b732b Prepared for new version 0.5
The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.drone.yml | 26 +
.drone.yml.sig | 1 +
.drone/build.sh | 20 +
.drone/copy_build.sh | 10 +
.drone/test_map.sh | 27 +
CMakeLists.txt | 41 +-
README.md | 24 +-
cmake/TestQuasiMap.cmake | 24 +
cmake/TestQuasiMapPerfectHash.cmake | 24 +
debian/changelog | 12 +
debian/control | 2 +-
debian/patches/use-debian-libs.patch | 48 +-
debian/rules | 5 +
include/IndexHeader.hpp | 13 +
include/RapMapConfig.hpp | 4 +-
include/RapMapSAIndex.hpp | 1 +
include/RapMapUtils.hpp | 5 +-
include/SACollector.hpp | 2 +-
include/SparseHashSerializer.hpp | 2 +-
include/concurrentqueue.h | 2 +-
include/kseq.h | 218 +-
include/picosha2.h | 359 +
include/{sparsepp.h => sparsepp/spp.h} | 2787 +--
include/sparsepp/spp_alloc.h | 830 +
include/sparsepp/spp_bitset.h | 700 +
include/sparsepp/spp_btree.h | 2211 ++
include/sparsepp/spp_config.h | 760 +
include/sparsepp/spp_memory.h | 121 +
include/sparsepp/spp_smartptr.h | 56 +
include/sparsepp/spp_stdint.h | 16 +
include/sparsepp/spp_timer.h | 58 +
include/sparsepp/spp_traits.h | 122 +
include/sparsepp/spp_utils.h | 441 +
sample_data/reads_1.fastq | 40000 +++++++++++++++++++++++++++++++
sample_data/reads_2.fastq | 40000 +++++++++++++++++++++++++++++++
sample_data/transcripts.fasta | 498 +
scripts/Dockerfile | 22 +
scripts/make-release.sh | 22 +-
src/CMakeLists.txt | 12 +-
src/RapMapSAIndex.cpp | 3 +-
src/RapMapSAIndexer.cpp | 65 +-
src/RapMapSAMapper.cpp | 6 +-
42 files changed, 87422 insertions(+), 2178 deletions(-)
create mode 100644 .drone.yml
create mode 100644 .drone.yml.sig
create mode 100755 .drone/build.sh
create mode 100755 .drone/copy_build.sh
create mode 100755 .drone/test_map.sh
create mode 100644 cmake/TestQuasiMap.cmake
create mode 100644 cmake/TestQuasiMapPerfectHash.cmake
create mode 100644 include/picosha2.h
rename include/{sparsepp.h => sparsepp/spp.h} (67%)
mode change 100644 => 100755
create mode 100755 include/sparsepp/spp_alloc.h
create mode 100755 include/sparsepp/spp_bitset.h
create mode 100755 include/sparsepp/spp_btree.h
create mode 100755 include/sparsepp/spp_config.h
create mode 100755 include/sparsepp/spp_memory.h
create mode 100755 include/sparsepp/spp_smartptr.h
create mode 100755 include/sparsepp/spp_stdint.h
create mode 100755 include/sparsepp/spp_timer.h
create mode 100755 include/sparsepp/spp_traits.h
create mode 100755 include/sparsepp/spp_utils.h
create mode 100644 sample_data/reads_1.fastq
create mode 100644 sample_data/reads_2.fastq
create mode 100644 sample_data/transcripts.fasta
create mode 100644 scripts/Dockerfile
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