[med-svn] [seqtools] 05/09: Remove blatSrc and jsoncpp from upstream source

Wed Oct 25 14:32:40 UTC 2017

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tille pushed a commit to branch master
in repository seqtools.

commit d17d95bc42a1ba689ae2e04d82765ce7b7e2f244
Author: Andreas Tille <tille at debian.org>
Date:   Wed Oct 25 14:49:10 2017 +0200

    Remove blatSrc and jsoncpp from upstream source
---
 debian/changelog |  2 +-
 debian/control   |  3 ++-
 debian/copyright | 79 +++++++++++++++-----------------------------------------
 debian/watch     |  2 +-
 4 files changed, 25 insertions(+), 61 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index edd8fe1..932f40a 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,4 +1,4 @@
-seqtools (4.44.1-1) UNRELEASED; urgency=medium
+seqtools (4.44.1+dfsg-1) UNRELEASED; urgency=medium
 
   * Initial release (Closes: #<bug>)
   TODO / clarify: relation to
diff --git a/debian/control b/debian/control
index 197e25e..3da71ed 100644
--- a/debian/control
+++ b/debian/control
@@ -6,7 +6,8 @@ Priority: optional
 Build-Depends: debhelper (>= 10),
                libgtk2.0-dev,
                libsqlite3-dev,
-               libcurl4-openssl-dev | libcurl4-dev
+               libcurl4-openssl-dev | libcurl4-dev,
+               libjsoncpp-dev
 Standards-Version: 4.1.1
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/seqtools.git
 Vcs-Git: https://anonscm.debian.org/git/debian-med/seqtools.git
diff --git a/debian/copyright b/debian/copyright
index 822a214..3aeb3bf 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,63 +1,26 @@
 Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Upstream-Name: <pkg>
-Source: <path_to_download>
-Comment: **** Before manually editing this file you should give ****
-           scan-copyrights
-         **** available in cme + lib-config-model-dpkg-perl     ****
-         **** package a try.  For existing copyright files try  ****
-           cme update dpkg-copyright
+Upstream-Name: SeqTools
+Source: ftp://ftp.sanger.ac.uk/pub/resources/software/seqtools/PRODUCTION/
+Files-Excluded: */blatSrc
+                */jsoncpp
+                */json
 
 Files: *
-Copyright: © 20xx-20yy <upstream>
-License: <license>
-
-Files: gbtools/src/blatSrc/lib/oligoTm.c
-Copyright: 1996-2004
-License: BSD-4-clause
- *         Whitehead Institute for Biomedical Research. All rights reserved.
- * 
- * Redistribution and use in source and binary forms, with or without
- * modification, are permitted provided that the following conditions are met:
- * 
- * 1.      Redistributions must reproduce the above copyright notice, this
- * list of conditions and the following disclaimer in the  documentation
- * and/or other materials provided with the distribution.  Redistributions of
- * source code must also reproduce this information in the source code itself.
- * 
- * 2.      If the program is modified, redistributions must include a notice
- * (in the same places as above) indicating that the redistributed program is
- * not identical to the version distributed by Whitehead Institute.
- * 
- * 3.      All advertising materials mentioning features or use of this
- * software  must display the following acknowledgment:
- *         This product includes software developed by the
- *         Whitehead Institute for Biomedical Research.
- * 
- * 4.      The name of the Whitehead Institute may not be used to endorse or
- * promote products derived from this software without specific prior written
- * permission.
- * 
- * We also request that use of this software be cited in publications as 
- * 
- *   Rozen, S., Skaletsky, H.  \"Primer3 on the WWW for general users
- *   and for biologist programmers.\"  In S. Krawetz and S. Misener, eds.
- *   Bioinformatics Methods and Protocols in the series Methods in 
- *   Molecular Biology.  Humana Press, Totowa, NJ, 2000, pages 365-386.
- *   Code available at
- *   http://fokker.wi.mit.edu/primer3/.
- * 
- * THIS SOFTWARE IS PROVIDED BY THE WHITEHEAD INSTITUTE ``AS IS'' AND  ANY
- * EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE  IMPLIED
- * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE  ARE
- * DISCLAIMED. IN NO EVENT SHALL THE WHITEHEAD INSTITUTE BE LIABLE  FOR ANY
- * DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL  DAMAGES
- * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS  OR
- * SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)  HOWEVER
- * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
- * SUCH DAMAGE.
+Copyright: 1991-2017 Eric Sonnhammer, Richard Durbin, Jean Thierry-Mieg
+                     Ed Griffiths, Roy Storey, Malcolm Hinsley, Gemma Barson
+License: GPL-3+
 
 Files: debian/*
-Copyright: © 2017 maintainername <maintainer at e.mail>
-License: <license>
+Copyright: 2017 Andreas Tille <tille at debian.org>
+License: GPL-3+
+
+License: GPL-3+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
diff --git a/debian/watch b/debian/watch
index 9788522..6792162 100644
--- a/debian/watch
+++ b/debian/watch
@@ -1,4 +1,4 @@
 version=4
 
-opts=passive \
+opts="passive,repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \
    ftp://ftp.sanger.ac.uk/pub/resources/software/seqtools/PRODUCTION/seqtools-@ANY_VERSION@@ARCHIVE_EXT@

-- 
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