[med-svn] [seqtools] 01/01: Fix spelling
Andreas Tille
tille at debian.org
Thu Oct 26 11:59:38 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository seqtools.
commit 829a73e7481ad17dc11a3ead9b9b9596f435fd00
Author: Andreas Tille <tille at debian.org>
Date: Thu Oct 26 13:57:03 2017 +0200
Fix spelling
---
debian/belvu.1 | 2 +-
debian/blixem.1 | 4 +-
debian/blixemh.1 | 4 +-
debian/dotter.1 | 2 +-
debian/patches/series | 1 +
debian/patches/spelling.patch | 139 ++++++++++++++++++++++++++++++++++++++++++
6 files changed, 146 insertions(+), 6 deletions(-)
diff --git a/debian/belvu.1 b/debian/belvu.1
index 05df917..0acb6f9 100644
--- a/debian/belvu.1
+++ b/debian/belvu.1
@@ -146,7 +146,7 @@ BMC Bioinformatics 6:108 (2005)
See http://www.sanger.ac.uk/resources/software/seqtools/ for more info.
.IP
Copyright (c) 2011\-2015: Genome Research Ltd.
-Belvu is distributed under the GNU Public License; see http://www.gnu.org/copyleft/gpl.txt
+Belvu is distributed under the GNU General Public License; see http://www.gnu.org/copyleft/gpl.txt
.TP
Version 4.44.1
14:27:56 Oct 19 2017
diff --git a/debian/blixem.1 b/debian/blixem.1
index e2b8084..6e552d7 100644
--- a/debian/blixem.1
+++ b/debian/blixem.1
@@ -10,7 +10,7 @@ Usage: blixem [options] [<sequence_file>] <data_file> [X options]
.IP
<sequence_file> contains the reference sequence in FASTA format.
<data_file> is a GFF v3 file containing alignments and other features.
-If <sequence_file> is ommitted, <data_file> should contain the reference
+If <sequence_file> is omitted, <data_file> should contain the reference
sequence in FASTA format, below a comment line that reads ##FASTA.
.IP
Both <sequence_file> and <data_file> can be substituted by "\-"
@@ -170,7 +170,7 @@ Sequence Homology Analysis. Comput. Applic. Biosci. 10:301\-307.
See http://www.sanger.ac.uk/resources/software/seqtools/ for more info.
.IP
Copyright (c) 2009\-2015: Genome Research Ltd.
-Blixem is distributed under the GNU Public License; see http://www.gnu.org/copyleft/gpl.txt
+Blixem is distributed under the GNU General Public License; see http://www.gnu.org/copyleft/gpl.txt
.TP
Version 4.44.1
14:27:56 Oct 19 2017
diff --git a/debian/blixemh.1 b/debian/blixemh.1
index 3a195cc..6a92e02 100644
--- a/debian/blixemh.1
+++ b/debian/blixemh.1
@@ -10,7 +10,7 @@ Usage: blixem [options] [<sequence_file>] <data_file> [X options]
.IP
<sequence_file> contains the reference sequence in FASTA format.
<data_file> is a GFF v3 file containing alignments and other features.
-If <sequence_file> is ommitted, <data_file> should contain the reference
+If <sequence_file> is omitted, <data_file> should contain the reference
sequence in FASTA format, below a comment line that reads ##FASTA.
.IP
Both <sequence_file> and <data_file> can be substituted by "\-"
@@ -170,7 +170,7 @@ Sequence Homology Analysis. Comput. Applic. Biosci. 10:301\-307.
See http://www.sanger.ac.uk/resources/software/seqtools/ for more info.
.IP
Copyright (c) 2009\-2015: Genome Research Ltd.
-Blixem is distributed under the GNU Public License; see http://www.gnu.org/copyleft/gpl.txt
+Blixem is distributed under the GNU General Public License; see http://www.gnu.org/copyleft/gpl.txt
.TP
Version 4.44.1
14:27:56 Oct 19 2017
diff --git a/debian/dotter.1 b/debian/dotter.1
index c83110f..57c7db0 100644
--- a/debian/dotter.1
+++ b/debian/dotter.1
@@ -140,7 +140,7 @@ sequence analysis. Gene 167(2):GC1\-10.
See http://www.sanger.ac.uk/resources/software/seqtools/ for more info.
.IP
Copyright (c) 2010\-2015: Genome Research Ltd.
-Dotter is distributed under the GNU Public License; see http://www.gnu.org/copyleft/gpl.txt
+Dotter is distributed under the GNU General Public License; see http://www.gnu.org/copyleft/gpl.txt
.TP
Version 4.44.1
14:27:56 Oct 19 2017
diff --git a/debian/patches/series b/debian/patches/series
index 61daa95..32c6ab5 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -2,3 +2,4 @@ dynamic-lib.patch
prevent_usage_of_blatsrc.patch
use_debian_packaged_jsoncpp.patch
fix_missing_includes.patch
+spelling.patch
diff --git a/debian/patches/spelling.patch b/debian/patches/spelling.patch
new file mode 100644
index 0000000..9e38f18
--- /dev/null
+++ b/debian/patches/spelling.patch
@@ -0,0 +1,139 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Thu, 19 Oct 2017 16:27:56 +0200
+Description: Fix spelling
+
+--- a/blixemApp/blxmain.cpp
++++ b/blixemApp/blxmain.cpp
+@@ -65,7 +65,7 @@ gboolean blixem_debug_G = FALSE ;
+ \n\
+ <sequence_file> contains the reference sequence in FASTA format.\n\
+ <data_file> is a GFF v3 file containing alignments and other features.\n\
+- If <sequence_file> is ommitted, <data_file> should contain the reference\n\
++ If <sequence_file> is omitted, <data_file> should contain the reference\n\
+ sequence in FASTA format, below a comment line that reads ##FASTA.\n\
+ \n\
+ Both <sequence_file> and <data_file> can be substituted by \"-\"\n\
+@@ -202,7 +202,7 @@ gboolean blixem_debug_G = FALSE ;
+
+ #define HELP_TEXT "\n\
+ FEATURES\n\
+- The prefered file format for <datafile> is GFF v3. (However, Blixem is still compatible with\n\
++ The preferred file format for <datafile> is GFF v3. (However, Blixem is still compatible with\n\
+ older file formats such as exblx and seqbl, as used by MSPcrunch).\n\
+ \n\
+ Blixem is mainly aimed at displaying alignments, but can also show other features such as\n\
+--- a/doc/User_doc/belvu_usage.txt
++++ b/doc/User_doc/belvu_usage.txt
+@@ -176,5 +176,5 @@
+ See http://www.sanger.ac.uk/resources/software/seqtools/ for more info.
+
+ Copyright (c) 2011: Genome Research Ltd.
+- Belvu is distributed under the GNU Public License; see http://www.gnu.org/copyleft/gpl.txt
++ Belvu is distributed under the GNU General Public License; see http://www.gnu.org/copyleft/gpl.txt
+
+--- a/doc/User_doc/blixem_usage.txt
++++ b/doc/User_doc/blixem_usage.txt
+@@ -4,7 +4,7 @@
+
+ <sequencefile> contains the reference sequence in FASTA format.
+ <datafile> is a GFF v3 file containing alignments and other features.
+- If <sequencefile> is ommitted, <datafile> should contain the reference
++ If <sequencefile> is omitted, <datafile> should contain the reference
+ sequence in FASTA format, below a comment line that reads ##FASTA.
+
+ Both <sequencefile> and <datafile> can be substituted by "-"
+@@ -108,7 +108,7 @@
+
+
+ FEATURES
+- The prefered file format for <datafile> is GFF v3. (However, Blixem is still compatible with
++ The preferred file format for <datafile> is GFF v3. (However, Blixem is still compatible with
+ older file formats such as exblx and seqbl, as used by MSPcrunch).
+
+ Blixem is mainly aimed at displaying alignments, but can also show other features such as
+@@ -205,4 +205,4 @@ MSPcrunch
+ See http://www.sanger.ac.uk/resources/software/seqtools/ for more info.
+
+ Copyright (c) 2009-2011: Genome Research Ltd.
+- Blixem is distributed under the GNU Public License; see http://www.gnu.org/copyleft/gpl.txt
++ Blixem is distributed under the GNU General Public License; see http://www.gnu.org/copyleft/gpl.txt
+--- a/doc/User_doc/dotter_usage.txt
++++ b/doc/User_doc/dotter_usage.txt
+@@ -88,5 +88,5 @@
+ See http://www.sanger.ac.uk/resources/software/seqtools/ for more info.
+
+ Copyright (c) 2010-2011: Genome Research Ltd.
+- Dotter is distributed under the GNU Public License; see http://www.gnu.org/copyleft/gpl.txt
++ Dotter is distributed under the GNU General Public License; see http://www.gnu.org/copyleft/gpl.txt
+
+--- a/seqtoolsUtils/version.hpp
++++ b/seqtoolsUtils/version.hpp
+@@ -120,7 +120,7 @@ PACKAGE_NAME " - " VERSION_STRING
+
+ /* Make a licence string */
+ #define UT_MAKE_LICENCE_STRING(TITLE) \
+-TITLE" is distributed under the GNU Public License; see http://www.gnu.org/copyleft/gpl.txt"
++TITLE" is distributed under the GNU General Public License; see http://www.gnu.org/copyleft/gpl.txt"
+
+
+ /* Define the authors of the SeqTools package. AUTHOR_LIST is a comma-separated list of all authors
+--- a/test/scripts/automated/blixem/test1_results
++++ b/test/scripts/automated/blixem/test1_results
+@@ -5,7 +5,7 @@
+
+ <sequencefile> contains the reference sequence in FASTA format.
+ <datafile> is a GFF v3 file containing alignments and other features.
+- If <sequencefile> is ommitted, <datafile> should contain the reference
++ If <sequencefile> is omitted, <datafile> should contain the reference
+ sequence in FASTA format, below a comment line that reads ##FASTA.
+
+ Both <sequencefile> and <datafile> can be substituted by "-"
+@@ -109,7 +109,7 @@
+
+
+ FEATURES
+- The prefered file format for <datafile> is GFF v3. (However, Blixem is still compatible with
++ The preferred file format for <datafile> is GFF v3. (However, Blixem is still compatible with
+ older file formats such as exblx and seqbl, as used by MSPcrunch).
+
+ Blixem is mainly aimed at displaying alignments, but can also show other features such as
+@@ -201,7 +201,7 @@ To make the datafile from blast output,
+ See http://www.sanger.ac.uk/resources/software/seqtools/ for more info.
+
+ Copyright (c) 2009-2011: Genome Research Ltd.
+- Blixem is distributed under the GNU Public License; see http://www.gnu.org/copyleft/gpl.txt
++ Blixem is distributed under the GNU General Public License; see http://www.gnu.org/copyleft/gpl.txt
+
+ Version 4.10-1-g6bff 17:38:25 Apr 4 2012
+
+--- a/test/scripts/automated/blixem/test2_results
++++ b/test/scripts/automated/blixem/test2_results
+@@ -5,7 +5,7 @@
+
+ <sequencefile> contains the reference sequence in FASTA format.
+ <datafile> is a GFF v3 file containing alignments and other features.
+- If <sequencefile> is ommitted, <datafile> should contain the reference
++ If <sequencefile> is omitted, <datafile> should contain the reference
+ sequence in FASTA format, below a comment line that reads ##FASTA.
+
+ Both <sequencefile> and <datafile> can be substituted by "-"
+@@ -117,7 +117,7 @@
+ See http://www.sanger.ac.uk/resources/software/seqtools/ for more info.
+
+ Copyright (c) 2009-2011: Genome Research Ltd.
+- Blixem is distributed under the GNU Public License; see http://www.gnu.org/copyleft/gpl.txt
++ Blixem is distributed under the GNU General Public License; see http://www.gnu.org/copyleft/gpl.txt
+
+ Version 4.10-1-g6bff 17:38:25 Apr 4 2012
+
+--- a/ChangeLog
++++ b/ChangeLog
+@@ -14137,7 +14137,7 @@
+ 5 files changed, 83 insertions(+), 20 deletions(-)
+
+ 2010-04-13 gb10 <gb10>
+- New blixem: make sure we don't find a non-monospace font in our prefered list of font families
++ New blixem: make sure we don't find a non-monospace font in our preferred list of font families
+ detailview.c | 6 ++++--
+ 1 file changed, 4 insertions(+), 2 deletions(-)
+
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/seqtools.git
More information about the debian-med-commit
mailing list