[med-svn] [raxml] 01/03: Added test cases

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository raxml.

commit 3680f2ff341b0e7ef65144366d438fe28fb2a419
Author: shamikam <shamika.mohanan at gmail.com>
Date:   Sun Oct 29 15:55:56 2017 +0530

    Added test cases
---
 debian/tests/README.test             | 13 +++++++++++++
 debian/tests/run-test                | 16 ++++++++++++++++
 debian/tests/test_data/testData.txt  |  5 +++++
 debian/tests/test_data/testData2.txt | 12 ++++++++++++
 debian/tests/test_data/testTree.txt  |  1 +
 debian/tests/test_data/testTree2.txt |  3 +++
 6 files changed, 50 insertions(+)

diff --git a/debian/tests/README.test b/debian/tests/README.test
new file mode 100644
index 0000000..a451116
--- /dev/null
+++ b/debian/tests/README.test
@@ -0,0 +1,13 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by executing
+
+    sh run-unit-test
+
+in order to confirm its integrity.
+
+Test data obtained from 
+
+1. RAxML manual- https://sco.h-its.org/exelixis/resource/download/NewManual.pdf
+2. PHYLIP documentation- http://evolution.genetics.washington.edu/phylip.html
diff --git a/debian/tests/run-test b/debian/tests/run-test
new file mode 100644
index 0000000..8ffb0e7
--- /dev/null
+++ b/debian/tests/run-test
@@ -0,0 +1,16 @@
+#!/bin/sh -e
+
+pkg=raxml
+
+if [ "$TMPDIR" = "" ] ; then
+  TMPDIR=$(mktemp -d /tmp/${pkg}-test.XXXX)
+  trap "rm -rf $TMPDIR" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cd $TMPDIR
+
+cp -a /usr/share/doc/${pkg}/test_data/* .
+gunzip -r *
+
+raxmlHPC -m GTRGAMMA -n TEST -s testData.txt ­-f A -t testTree.txt 
+raxmlHPC -m GTRCAT -z testTree2.txt -s testData2.txt -f r -n TEST2
diff --git a/debian/tests/test_data/testData.txt b/debian/tests/test_data/testData.txt
new file mode 100644
index 0000000..66b750b
--- /dev/null
+++ b/debian/tests/test_data/testData.txt
@@ -0,0 +1,5 @@
+4 4
+t1 ACGT
+t2 AATT
+t3 ATAT
+t4 CCGT
diff --git a/debian/tests/test_data/testData2.txt b/debian/tests/test_data/testData2.txt
new file mode 100644
index 0000000..a6ec0cb
--- /dev/null
+++ b/debian/tests/test_data/testData2.txt
@@ -0,0 +1,12 @@
+10   40
+A         CACACACAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAA
+B         CACACAACAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAA
+C         CACAACAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAA
+D         CAACAAAACAAAAAAAAACAAAAAAAAAAAAAAAAAAAAA
+E         CAACAAAAACAAAAAAAACAAAAAAAAAAAAAAAAAAAAA
+F         ACAAAAAAAACACACAAAACAAAAAAAAAAAAAAAAAAAA
+G         ACAAAAAAAACACAACAAACAAAAAAAAAAAAAAAAAAAA
+H         ACAAAAAAAACAACAAAAACAAAAAAAAAAAAAAAAAAAA
+I         ACAAAAAAAAACAAAACAACAAAAAAAAAAAAAAAAAAAA
+J         ACAAAAAAAAACAAAAACACAAAAAAAAAAAAAAAAAAAA
+
diff --git a/debian/tests/test_data/testTree.txt b/debian/tests/test_data/testTree.txt
new file mode 100644
index 0000000..1e78482
--- /dev/null
+++ b/debian/tests/test_data/testTree.txt
@@ -0,0 +1 @@
+((t1,t2),(t3,t4));
diff --git a/debian/tests/test_data/testTree2.txt b/debian/tests/test_data/testTree2.txt
new file mode 100644
index 0000000..579566a
--- /dev/null
+++ b/debian/tests/test_data/testTree2.txt
@@ -0,0 +1,3 @@
+ (A,(B,C),D); 
+ (B,(A,D),C);
+ (B:6.0,(A:5.0,C:3.0):5.0,D:11.0); 

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