[med-svn] [freebayes] 02/06: Merge tag 'upstream/1.1.0'
Andreas Tille
tille at debian.org
Sat Sep 2 05:46:07 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to tag debian/1.0.2-1
in repository freebayes.
commit 393776126fc0270c11398abd3031f2281f766fe8
Merge: be3cf11 a0624d4
Author: Andreas Tille <tille at debian.org>
Date: Sun Jun 18 14:47:32 2017 +0200
Merge tag 'upstream/1.1.0'
Upstream version 1.1.0
.gitmodules | 9 +-
README.md | 8 +-
python/allelebayes.py | 2 +
python/multiset.py | 2 +-
scripts/bgziptabix | 13 +
scripts/fasta_generate_regions.py | 2 +-
scripts/freebayes-parallel | 4 +-
scripts/sam_add_rg.pl | 2 +-
src/Allele.h | 7 +-
src/AlleleParser.cpp | 633 ++++++++++++++++++++-------------
src/AlleleParser.h | 63 ++--
src/Fasta.cpp | 24 +-
src/Fasta.h | 3 +
src/Genotype.cpp | 2 +-
src/LeftAlign.cpp | 115 +++---
src/LeftAlign.h | 94 ++++-
src/Makefile | 40 ++-
src/NonCall.cpp | 15 +-
src/NonCall.h | 2 +
src/Parameters.cpp | 8 +
src/Parameters.h | 1 +
src/ResultData.cpp | 56 ++-
src/ResultData.h | 8 +-
src/bamleftalign.cpp | 69 ++--
src/freebayes.cpp | 23 +-
test/Makefile | 2 +-
test/region-and-target-handling.t | 104 ------
test/t/00_region_and_target_handling.t | 145 ++++++++
test/t/01_call_variants.t | 12 +-
test/t/02_multi_bam.t | 88 +++++
test/t/03_reference_bases.t | 56 +++
31 files changed, 1066 insertions(+), 546 deletions(-)
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/freebayes.git
More information about the debian-med-commit
mailing list