[med-svn] [canu] 05/05: Fix gcc-7 error (violation of format-security)

[Andreas Tille]

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tille pushed a commit to branch master
in repository canu.

commit 26718715ad25aa6a27dcb4f88268665cd0ac5f95
Author: Andreas Tille <tille at debian.org>
Date:   Sat Sep 2 15:50:11 2017 +0200

    Fix gcc-7 error (violation of format-security)
---
 debian/changelog                           |  2 +
 debian/patches/gcc-7_format-security.patch | 88 ++++++++++++++++++++++++++++++
 debian/patches/series                      |  1 +
 3 files changed, 91 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index b22b588..b7bc3e5 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -4,6 +4,8 @@ canu (1.6+dfsg-1) UNRELEASED; urgency=medium
   * New upstream version
   * debhelper 10
   * Standards-Version: 4.1.0 (no changes needed)
+  * Fix gcc-7 error (violation of format-security)
+    Closes: #871390
 
  -- Andreas Tille <tille at debian.org>  Sat, 02 Sep 2017 15:30:21 +0200
 
diff --git a/debian/patches/gcc-7_format-security.patch b/debian/patches/gcc-7_format-security.patch
new file mode 100644
index 0000000..ce1ac58
--- /dev/null
+++ b/debian/patches/gcc-7_format-security.patch
@@ -0,0 +1,88 @@
+Author: Andreas Tille <tille at debian.org>
+last-Update: Sat, 02 Sep 2017 15:30:21 +0200
+Bug-Debian: https://bugs.debian.org/871390
+Description: Fix gcc-7 error (violation of format-security)
+
+--- a/src/merTrim/merTrim.C
++++ b/src/merTrim/merTrim.C
+@@ -1782,7 +1782,7 @@ mertrimComputation::dump(char *label) {
+     if (i+1 == clrEnd) { logLine[logPos++] = ']'; logLine[logPos++] = '-'; }
+   }
+   strcpy(logLine + logPos, " (ORI)\n");
+-  fprintf(stderr, logLine);
++  fprintf(stderr, "%s", logLine);
+ 
+   logPos = 0;
+   for (uint32 i=0; i<seqLen; i++) {
+@@ -1792,7 +1792,7 @@ mertrimComputation::dump(char *label) {
+     if (i+1 == clrEnd) { logLine[logPos++] = ']'; logLine[logPos++] = '-'; }
+   }
+   strcpy(logLine + logPos, " (SEQ)\n");
+-  fprintf(stderr, logLine);
++  fprintf(stderr, "%s", logLine);
+ 
+   if (corrSeq && verifySeq) {
+     uint32 i=0;
+@@ -1813,7 +1813,7 @@ mertrimComputation::dump(char *label) {
+       if (i+1 == clrEnd) { logLine[logPos++] = ']'; logLine[logPos++] = '-'; }
+     }
+     strcpy(logLine + logPos, " (VAL)\n");
+-    fprintf(stderr, logLine);
++    fprintf(stderr, "%s", logLine);
+ 
+     logPos = 0;
+     for (uint32 i=0; i<seqLen; i++) {
+@@ -1823,7 +1823,7 @@ mertrimComputation::dump(char *label) {
+       if (i+1 == clrEnd) { logLine[logPos++] = ']'; logLine[logPos++] = '-'; }
+     }
+     strcpy(logLine + logPos, " (VAL)\n");
+-    fprintf(stderr, logLine);
++    fprintf(stderr, "%s", logLine);
+   }
+ 
+   logPos = 0;
+@@ -1834,7 +1834,7 @@ mertrimComputation::dump(char *label) {
+     if (i+1 == clrEnd) { logLine[logPos++] = ']'; logLine[logPos++] = '-'; }
+   }
+   strcpy(logLine + logPos, " (QLT)\n");
+-  fprintf(stderr, logLine);
++  fprintf(stderr, "%s", logLine);
+ 
+   logPos = 0;
+   for (uint32 i=0; i<seqLen; i++) {
+@@ -1844,7 +1844,7 @@ mertrimComputation::dump(char *label) {
+     if (i+1 == clrEnd) { logLine[logPos++] = ']'; logLine[logPos++] = '-'; }
+   }
+   strcpy(logLine + logPos, " (COVERAGE)\n");
+-  fprintf(stderr, logLine);
++  fprintf(stderr, "%s", logLine);
+ 
+   logPos = 0;
+   for (uint32 i=0; i<seqLen; i++) {
+@@ -1854,7 +1854,7 @@ mertrimComputation::dump(char *label) {
+     if (i+1 == clrEnd) { logLine[logPos++] = ']'; logLine[logPos++] = '-'; }
+   }
+   strcpy(logLine + logPos, " (CORRECTIONS)\n");
+-  fprintf(stderr, logLine);
++  fprintf(stderr, "%s", logLine);
+ 
+   logPos = 0;
+   for (uint32 i=0; i<seqLen; i++) {
+@@ -1864,7 +1864,7 @@ mertrimComputation::dump(char *label) {
+     if (i+1 == clrEnd) { logLine[logPos++] = ']'; logLine[logPos++] = '-'; }
+   }
+   strcpy(logLine + logPos, " (DISCONNECTION)\n");
+-  fprintf(stderr, logLine);
++  fprintf(stderr, "%s", logLine);
+ 
+   logPos = 0;
+   for (uint32 i=0; i<seqLen; i++) {
+@@ -1874,7 +1874,7 @@ mertrimComputation::dump(char *label) {
+     if (i+1 == clrEnd) { logLine[logPos++] = ']'; logLine[logPos++] = '-'; }
+   }
+   strcpy(logLine + logPos, " (ADAPTER)\n");
+-  fprintf(stderr, logLine);
++  fprintf(stderr, "%s", logLine);
+ 
+   delete [] logLine;
+ }
diff --git a/debian/patches/series b/debian/patches/series
index 033f46d..2f807d2 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,3 +1,4 @@
 external-deps.patch
 relative-paths.patch
 use-debian-mhap-at-runtime.patch
+gcc-7_format-security.patch

-- 
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