[med-svn] [bowtie] branch master created (now 2b5c03f)
Andreas Tille
tille at debian.org
Mon Sep 4 11:56:56 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository bowtie.
at 2b5c03f Standards-Version: 4.1.0 (no changes needed)
This branch includes the following new commits:
new 73e7afd Seed of a packaging of NGS tool bowtie.
new bed0798 Some improvements to packaging of bowtie ... yet untested.
new 0287ad4 Even better now.
new 344b7ea ITP arrived.
new b99b01f Added SeqAn copyright information.
new ce2e8cb Minor changes to Vcs fields
new bb580f7 Added myself to uploader; fixed watch file
new c2041bf Added get-orig-source
new 8124e7f Remove useless templates, add bowtie-*debug executables, create example package
new 3aff7e3 Add link to manpages
new b6e8fa7 Fix comment
new 540cd84 added doc-base control file
new 09bcd3b Final polishing in copyright file; check whether Debian packaged version of SeqAn would work but failed and documented this issue in the code
new f341375 Final polishing of bowtie and upload to unstable
new 280ba91 Do not give a pointer to non existing info pages in manpages
new 67ab817 set mergeWithUpstream 1 for svn-buildpackage
new d47232b Fixed Vcs fields
new 1fbb753 Added citation information
new cb9a66e Calculate package name
new 9278b44 DEP5 verified using `cme fix dpkg-copyright`
new 203e455 Patch to build using gcc-4.7
new 7eb11f0 Some fixes in copyright (basically fixing typo s/File/Files/); prepare rules for hardening; debhelper 9; upload to unstable
new 742a5e6 Support hardening flags
new f3f6b42 Upload to unstable
new a81a865 Preparation for bowtie 1.0.0: refreshed patches and usage of Debian's SeqAn library.
new 556f6ef Added machine_bits_detection.patch.
new a959922 Build-Depends: seqan-dev. Added myself to uploaders. Changelog entry for machine_bits_detection.patch.
new 83925ae Preparation for 1.0.0-1.
new a5ee556 Depends on version 1.3 of SeqAn. Updated README.source. Removed machine bits detection.
new 13867aa Prepare for uploading 1.0.0-2.
new 9124dd1 Fix build failures on mips and mipsel.
new 345ad33 Removed machine_bits_detection.patch, this time for real.
new 4f99967 Ignore debian/.pc directory used by quilt.
new 8f700b9 * Lintian fixes: - Removed DM-Upload-Allowed field. - Standards Version 3.9.4 (no changes needed). - Remove execute bits on some files in bowtie-examples. * Don't compress *.ebwt index files in bowtie-examples package. * Package description now starts with a capital letter.
new 44b26b9 Fixed (hopefully) FTBFS by using override_dh_fixperms-indep target instead of override_dh_fixperms in debian/rules.
new f8877c7 Move debian/upstream to debian/upstream/metadata
new 4cd3529 New patch debian/patches/seqan-popcount.patch. SeqAn 1.4 is required. Standards-Version: 3.9.5. Updated Vcs-Svn and Vcs-Browse.
new bb8969d Added Closes: #733398
new bf733ff New upstream version (adapted patches); drop debian/get-orig-source but rather remove the SeqAn-1.1 code copy via Files-Excluded
new e1a799d Priority: optional
new 3566a72 Upload to unstable
new 47293d2 New upstream version (adapted patches); TODO: Does not build - perhaps further adaptation to seqan-1.4 is needed
new 887e81c Revert changes to old version to fix build issue on all arches except amd64
new f4a524f Add README.Debian informing users about the fact that we ignore copy of cpuid.h
new 95370cb Add unit tests for build time and autopkgtest
new 86feb3d Add debian/README.test to explain how to test the package
new fee9f79 Fix instructions for manual test
new 765df72 Close #756780
new e58255c Reflect discussion on Debian Med list about unit testing
new 3306eb0 Enhance documentation about testing and upload to unstable
new 09185ae The patch does not really help to build the package on other architectures
new a7b6044 Stop building package on other architectures than amd64; drop some unneeded copyright statements
new e518d1d Try again to upgrade to latest upstream version
new d737463 Update patches to latest upstream version
new 24c542e Further patch to adapt to SeqAn 1.4 (thanks to Gert Wollny); Python dependency
new a55bb54 Experimenting with adding EDAM tags (http://bioportal.bioontology.org/ontologies/EDAM) to this package.
new 65bd043 Install missing commands.
new e42cafc Temporarly revert r18504 to make a lighter debdiff for Testing update.
new 4df8fc4 bowtie (1.1.1-2) unstable; urgency=high
new 702f9a4 Unrevert revision r18504 after RC bug was fixed.
new dea34e0 New upstream version, refreshed patches
new 09b6ab6 Enabling ppc64el on Makefile and debian/control
new c7de153 Adapt patch + DEP3
new acaea90 Upload to unstable
new c2998e0 Enable building on arm64
new 3b1316e Enable building on arm64 in debian/
new 5101b21 Remove inactive uploader, fix spelling, upload to unstable
new d3b0afc Patch forwarded upstream
new 5afb7db Enable building arch independent packages separately, Fix clean target
new 700c5df make build reproducible
new 646442f enable full hardening
new 32bc36e fix autopkgtest
new 66f09af bump Standards-Version
new 522bc3e update d/changelog
new fd515f1 use secure Vcs-Browser
new 0f4b8fd make reproducibility changes less drastic
new 8e368b2 EDAM updated and introduced registry lines to metadata
new d8fc09d make build reproducible again
new 0ef5b2d Enable build on all 64bit architectures
new cde79d0 Add EDAM version
new 0b081e6 Fix bloody wrong syntax of yaml file - could you please check via yamllint first
new 5c1a2b6 It is scope_s
new 48937db Fix names
new 67144e2 Topics are pure text - so far no ID recorded
new 2cc1827 Update to version 1.2
new bd3ecb6 bowtie lintian warnings/error
new d907c45 bowtie lintian warnings/error
new 759b9d6 Correcting semantics, syntax is yamllint clean.
new 526e290 New upstream version 1.1.2
new 98d8ed0 Updated version 1.1.2 from 'upstream/1.1.2'
new 5fd2a1d New upstream version 1.2.0+dfsg
new 5c61751 Updated version 1.2.0+dfsg from 'upstream/1.2.0+dfsg'
new f444744 Moved packaging from SVN to Git
new 9a49607 New upstream version 1.2.1.1
new 443bee5 Updated version 1.2.1.1 from 'upstream/1.2.1.1'
new 09a0af7 New upstream version, adapt patches
new 68c96a0 debhelper 10
new 2b5c03f Standards-Version: 4.1.0 (no changes needed)
The 98 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
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