[med-svn] [r-cran-vegan] branch master updated (49d217e -> 1ca62d6)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository r-cran-vegan.

      from  49d217e   New upstream version
       new  113893e   New upstream version 2.4-4
       new  b163818   Merge tag 'upstream/2.4-4'
       new  8d26578   New upstream version
       new  1e1c3d5   Standards-Version: 4.1.0 (no changes needed)
       new  1ca62d6   Add README.source to document binary data; upload to unstable

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                  |   8 +--
 MD5                          |  92 ++++++++++++++++----------------
 NAMESPACE                    |   2 +-
 R/anova.ccabyterm.R          |  19 ++++---
 R/as.mlm.cca.R               |  10 ++--
 R/as.mlm.rda.R               |   7 +--
 R/biplot.rda.R               |   2 +-
 R/cca.default.R              |   6 ++-
 R/envfit.default.R           |   2 +-
 R/inertcomp.R                |   6 +--
 R/intersetcor.R              |  19 ++++---
 R/ordiParseFormula.R         |  13 +++--
 R/ordiR2step.R               |  55 +++++++++----------
 R/ordiTerminfo.R             |   5 +-
 R/ordiYbar.R                 | 123 +++++++++++++++++++++++++++++++++++++++++++
 R/ordispider.R               |  11 ++--
 R/ordisurf.R                 |   9 ++--
 R/orditkplot.R               |  10 ++--
 R/plot.meandist.R            |   4 +-
 R/spenvcor.R                 |  10 ++--
 R/summary.cca.R              |   4 +-
 R/tolerance.cca.R            |  23 ++++++--
 R/veganMahatrans.R           |   9 ++--
 R/vegdist.R                  |   3 +-
 build/partial.rdb            | Bin 21870 -> 21902 bytes
 build/vignette.rds           | Bin 347 -> 348 bytes
 debian/README.source         |  45 ++++++++++++++++
 debian/changelog             |   8 +++
 debian/control               |   2 +-
 inst/NEWS.Rd                 | 116 +++++++++++++++++++++++++++++++++++++++-
 inst/doc/FAQ-vegan.Rmd       |  21 ++++----
 inst/doc/FAQ-vegan.html      |  21 ++++----
 inst/doc/decision-vegan.pdf  | Bin 340533 -> 340989 bytes
 inst/doc/diversity-vegan.pdf | Bin 364765 -> 365557 bytes
 inst/doc/intro-vegan.pdf     | Bin 238492 -> 238607 bytes
 inst/doc/partitioning.pdf    | Bin 137361 -> 137352 bytes
 man/MOStest.Rd               |   2 +-
 man/cca.Rd                   |   2 +-
 man/cca.object.Rd            |  32 +++++++----
 man/envfit.Rd                |  22 ++++----
 man/mso.Rd                   |   2 +-
 man/ordistep.Rd              |  64 +++++++++++-----------
 man/ordisurf.Rd              |   2 +-
 man/orditkplot.Rd            |  33 +++++++-----
 man/plot.cca.Rd              |  10 ----
 man/specaccum.Rd             |   2 +-
 man/vegan-internal.Rd        |   2 +-
 man/vegdist.Rd               |   8 ++-
 src/init.c                   |  79 +++++++++++++++++++++++++++
 src/vegdist.c                |   2 +-
 vignettes/FAQ-vegan.Rmd      |  21 ++++----
 51 files changed, 682 insertions(+), 266 deletions(-)
 create mode 100644 R/ordiYbar.R
 create mode 100644 debian/README.source
 create mode 100644 src/init.c

-- 
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