[med-svn] [r-cran-vegan] 02/05: Merge tag 'upstream/2.4-4'

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-cran-vegan.

commit b1638186cb943bae7586767678ef319fed343721
Merge: 49d217e 113893e
Author: Andreas Tille <tille at debian.org>
Date:   Thu Sep 7 13:04:48 2017 +0200

    Merge tag 'upstream/2.4-4'
    
    Upstream version 2.4-4

 DESCRIPTION                  |   8 +--
 MD5                          |  92 ++++++++++++++++----------------
 NAMESPACE                    |   2 +-
 R/anova.ccabyterm.R          |  19 ++++---
 R/as.mlm.cca.R               |  10 ++--
 R/as.mlm.rda.R               |   7 +--
 R/biplot.rda.R               |   2 +-
 R/cca.default.R              |   6 ++-
 R/envfit.default.R           |   2 +-
 R/inertcomp.R                |   6 +--
 R/intersetcor.R              |  19 ++++---
 R/ordiParseFormula.R         |  13 +++--
 R/ordiR2step.R               |  55 +++++++++----------
 R/ordiTerminfo.R             |   5 +-
 R/ordiYbar.R                 | 123 +++++++++++++++++++++++++++++++++++++++++++
 R/ordispider.R               |  11 ++--
 R/ordisurf.R                 |   9 ++--
 R/orditkplot.R               |  10 ++--
 R/plot.meandist.R            |   4 +-
 R/spenvcor.R                 |  10 ++--
 R/summary.cca.R              |   4 +-
 R/tolerance.cca.R            |  23 ++++++--
 R/veganMahatrans.R           |   9 ++--
 R/vegdist.R                  |   3 +-
 build/partial.rdb            | Bin 21870 -> 21902 bytes
 build/vignette.rds           | Bin 347 -> 348 bytes
 inst/NEWS.Rd                 | 116 +++++++++++++++++++++++++++++++++++++++-
 inst/doc/FAQ-vegan.Rmd       |  21 ++++----
 inst/doc/FAQ-vegan.html      |  21 ++++----
 inst/doc/decision-vegan.pdf  | Bin 340533 -> 340989 bytes
 inst/doc/diversity-vegan.pdf | Bin 364765 -> 365557 bytes
 inst/doc/intro-vegan.pdf     | Bin 238492 -> 238607 bytes
 inst/doc/partitioning.pdf    | Bin 137361 -> 137352 bytes
 man/MOStest.Rd               |   2 +-
 man/cca.Rd                   |   2 +-
 man/cca.object.Rd            |  32 +++++++----
 man/envfit.Rd                |  22 ++++----
 man/mso.Rd                   |   2 +-
 man/ordistep.Rd              |  64 +++++++++++-----------
 man/ordisurf.Rd              |   2 +-
 man/orditkplot.Rd            |  33 +++++++-----
 man/plot.cca.Rd              |  10 ----
 man/specaccum.Rd             |   2 +-
 man/vegan-internal.Rd        |   2 +-
 man/vegdist.Rd               |   8 ++-
 src/init.c                   |  79 +++++++++++++++++++++++++++
 src/vegdist.c                |   2 +-
 vignettes/FAQ-vegan.Rmd      |  21 ++++----
 48 files changed, 628 insertions(+), 265 deletions(-)

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