[med-svn] [r-cran-vegan] branch upstream updated (6a0cd67 -> 113893e)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch upstream
in repository r-cran-vegan.

      from  6a0cd67   New upstream version 2.4-2
       new  113893e   New upstream version 2.4-4

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                  |   8 +--
 MD5                          |  92 ++++++++++++++++----------------
 NAMESPACE                    |   2 +-
 R/anova.ccabyterm.R          |  19 ++++---
 R/as.mlm.cca.R               |  10 ++--
 R/as.mlm.rda.R               |   7 +--
 R/biplot.rda.R               |   2 +-
 R/cca.default.R              |   6 ++-
 R/envfit.default.R           |   2 +-
 R/inertcomp.R                |   6 +--
 R/intersetcor.R              |  19 ++++---
 R/ordiParseFormula.R         |  13 +++--
 R/ordiR2step.R               |  55 +++++++++----------
 R/ordiTerminfo.R             |   5 +-
 R/ordiYbar.R                 | 123 +++++++++++++++++++++++++++++++++++++++++++
 R/ordispider.R               |  11 ++--
 R/ordisurf.R                 |   9 ++--
 R/orditkplot.R               |  10 ++--
 R/plot.meandist.R            |   4 +-
 R/spenvcor.R                 |  10 ++--
 R/summary.cca.R              |   4 +-
 R/tolerance.cca.R            |  23 ++++++--
 R/veganMahatrans.R           |   9 ++--
 R/vegdist.R                  |   3 +-
 build/partial.rdb            | Bin 21870 -> 21902 bytes
 build/vignette.rds           | Bin 347 -> 348 bytes
 inst/NEWS.Rd                 | 116 +++++++++++++++++++++++++++++++++++++++-
 inst/doc/FAQ-vegan.Rmd       |  21 ++++----
 inst/doc/FAQ-vegan.html      |  21 ++++----
 inst/doc/decision-vegan.pdf  | Bin 340533 -> 340989 bytes
 inst/doc/diversity-vegan.pdf | Bin 364765 -> 365557 bytes
 inst/doc/intro-vegan.pdf     | Bin 238492 -> 238607 bytes
 inst/doc/partitioning.pdf    | Bin 137361 -> 137352 bytes
 man/MOStest.Rd               |   2 +-
 man/cca.Rd                   |   2 +-
 man/cca.object.Rd            |  32 +++++++----
 man/envfit.Rd                |  22 ++++----
 man/mso.Rd                   |   2 +-
 man/ordistep.Rd              |  64 +++++++++++-----------
 man/ordisurf.Rd              |   2 +-
 man/orditkplot.Rd            |  33 +++++++-----
 man/plot.cca.Rd              |  10 ----
 man/specaccum.Rd             |   2 +-
 man/vegan-internal.Rd        |   2 +-
 man/vegdist.Rd               |   8 ++-
 src/init.c                   |  79 +++++++++++++++++++++++++++
 src/vegdist.c                |   2 +-
 vignettes/FAQ-vegan.Rmd      |  21 ++++----
 48 files changed, 628 insertions(+), 265 deletions(-)
 create mode 100644 R/ordiYbar.R
 create mode 100644 src/init.c

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